Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010245.1 Corchorus capsularis cultivar CVL-1 contig10266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41741

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3026--3153
61
2.1
61
94
1
220
45
19
10
25
1.81
4789--5357
305
1.9
305
80
5
677
38
13
14
33
1.85
5060--5897
333
2.5
330
82
3
1004
37
14
13
34
1.85
10208--10243
2
17.5
2
88
5
54
47
5
0
47
1.25
10265--10323
31
1.9
31
85
0
82
27
16
8
47
1.76
10387--10418
14
2.1
16
88
11
50
21
12
0
65
1.25
13093--13316
107
2.1
107
92
1
369
35
15
16
33
1.90
14211--14328
31
3.9
31
92
2
177
34
27
23
13
1.93
16507--17576
325
3.2
327
79
6
1034
35
16
14
33
1.90
16546--17515
336
2.9
330
80
6
991
35
15
15
33
1.89
17764--17798
2
18.0
2
88
5
54
45
0
0
54
0.99
19833--19861
2
14.5
2
100
0
58
51
0
0
48
1.00
20747--20842
48
2.0
48
97
0
183
52
11
6
30
1.62
21229--21258
2
15.5
2
93
6
53
50
0
0
50
1.00
21280--21339
3
20.0
3
100
0
120
33
0
0
66
0.92
23204--23237
2
17.0
2
93
0
50
44
0
0
55
0.99
27408--27478
37
1.9
37
94
0
124
36
8
18
36
1.81
29846--29916
37
1.9
37
91
0
115
38
9
16
35
1.82
36454--36505
27
1.9
27
84
7
70
15
5
21
57
1.58
39433--39459
14
1.9
14
100
0
54
29
0
18
51
1.46

Tables:   1

The End!