Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010250.1 Corchorus capsularis cultivar CVL-1 contig10271, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 120739
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:14 original size:2 final size:2
Alignment explanation
Indices: 8--43 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1 TCCTTGA
8 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44 TCATCTAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1304 original size:334 final size:330
Alignment explanation
Indices: 378--1938 Score: 1143
Period size: 334 Copynumber: 4.7 Consensus size: 330
368 ATGGAGGGAG
* * * * * *
378 TAATTCAGAAAAATATGAAAAACGATTTTAAAAACGTGAAAAGTTCTCCAATATTTTTGGAGTTT
1 TAATTCAG-AAAATATGAAAAATGATATTAGAAGCGTGAAAAGTCCTCCAATATTTTTGG-GTTA
* * * * * ** *
443 AATAATATATATTTTATAAGTATTTTAG-ACAAAAATTGAGGAAAACTATTTCTGGTCAATTTTT
64 AATTATATATTTTTTATGAGTATTAT-GCCCAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTT
* * * * * * * *
507 GGAAAATATTAGCCGAAATCGTGTACGTTGGTCGAAATCACCGTTTTTGGCTAAAAACGCATTCC
128 GCAAAATTTTAGCCGAAATCG-ATACATT-ATC---ATCACGGTTTTTGGCTAAAAACGCGTTTC
* * * * ** *
572 AGGG-CCCCGGTTCAGTGTTGCATGATTTTTTGCGTCGAGA-TTTTTTGAAATATCTATATTAAT
188 AGGGACCCCGGTT-AGTTTTGCATGATTTTTGGCATCAAGACTCCTTTGAAATATCTATATTCAT
* * * * ***
635 CTAACCAAATCTCATCCACAATGGATTTAAGGATTTG-TAAAACAAGCATCTGAATCATGTTTCG
252 CTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACAAGCATCTGAATCATGTTTCG
699 ATTTAATTAGAAAT
317 ATTTAATTAGAAAT
* * * * * ** * *
713 TAATTCGGAAAATTACAGGAAAAACGAGATTAGAAGCATGAAAAACCCTTCAATCTTTTTGGCGT
1 TAATTCAGAAAA-T--ATGAAAAATGATATTAGAAGCGTGAAAAGTCCTCCAATATTTTTGG-GT
* * * * * * * *
778 TGAATTATATAATTTTTATGAGTATTCTGGCTAAAAATTGAGGAAATAACTTTCGAGTCAATTTT
62 TAAATTATATATTTTTTATGAGTATTATGCCCAAAAATTGAGGAAAAAAATTTCGGGTCAATTTT
* * * * **
843 TGCAAAATTCTAGCCGGAATCGAGTA-ATAATCATCACGATTTTTGGCTAAAAACGC-TTTC-CT
127 TGCAAAATTTTAGCCGAAATCGA-TACATTATCATCACGGTTTTTGGCTAAAAACGCGTTTCAGG
* * * ** *
905 GAGCCTCGGCTAAGTTTTGCATGATTTTTGACATCAAGACT-CTTTGGGATATCCATATTCATCT
191 GA-CCCCGG-TTAGTTTTGCATGATTTTTGGCATCAAGACTCCTTTGAAATATCTATATTCATCT
* * * * *
969 AATCAAATCTCAGCTACATTGGATTTAAGAATTTATTTTTACGAGCATCTGAATCCTATTTCGAT
254 AATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACAAGCATCTGAATCATGTTTCGAT
1034 TTAATTAGAAAT
319 TTAATTAGAAAT
* * * *
1046 TAATTCTGAAAATATGAAAAAATGATATTGGAAGCGTGAAAAGGCCTCCAATCTTTTTGGTGTTA
1 TAATTCAGAAAATATG-AAAAATGATATTAGAAGCGTGAAAAGTCCTCCAATATTTTTGG-GTTA
*
1111 AATTATATATTTTTTATGA-TAATTTATGCCCAAAAATTGACGGAAAAAAATTTCGGGTCATTTT
64 AATTATATATTTTTTATGAGT-A-TTATGCCCAAAAATTGA-GGAAAAAAATTTCGGGTCAATTT
*
1175 TTGCAAAATTTTAGCCGAAATCGTATACATTATCATCACGGTTTTTTGCTAAAAACGCGTTTC-G
126 TTGCAAAATTTTAGCCGAAATCG-ATACATTATCATCACGGTTTTTGGCTAAAAACGCGTTTCAG
** * *
1239 GGACCTTGGCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCTTT-AAATATCTATATTCATCT
190 GGACCCCGG-TTAGTTTTGCATGATTTTTGGCATCAAGACTCCTTTGAAATATCTATATTCATCT
** * * * * *
1303 AATCAAATCTCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGTATCTGAAGCTTGTTTCGAT
254 AATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACAAGCATCTGAATCATGTTTCGAT
*
1368 TTGATTAGAAAT
319 TTAATTAGAAAT
* * * * *
1380 TAATTCAAAAAAATATGAAAAATAATATTAAAACCGTGAAGAGTCCTCCAATATTTTT-GG--AA
1 TAATTC-AGAAAATATGAAAAATGATATTAGAAGCGTGAAAAGTCCTCCAATATTTTTGGGTTAA
* * * ** * * *
1442 CTTATATA--TTCTATGAGTATTGT-CGCTTAAAATTGAGGAAGAATATTTCGGGTCAATTTTTA
65 ATTATATATTTTTTATGAGTATTATGC-CCAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTG
* * * * * *
1504 CAAAATTTTAGCCGAAATCG-TGC---ACCATCACGGTTTTTTTGGTTAAAACCGCG-TTCTGAG
129 CAAAATTTTAGCCGAAATCGATACATTATCATCACGG--TTTTTGGCTAAAAACGCGTTTCAGGG
* * *** *
1564 ACCCCGTGTCAGTTTTGCATGACTTTTGGTGGCAACACTCC-TTGAAATATCTATATTCATCT-A
192 ACCCCG-GTTAGTTTTGCATGATTTTTGGCATCAAGACTCCTTTGAAATATCTATATTCATCTAA
* * * *
1627 TCCAAATCAT-AGCCAAATTGGATTTAAGAATTTGTTTTTACAAGTATTTGAATCATGTTTCAAT
256 T-CAAATC-TCAGCCACATTGGATTTAAGAATTTGTTTTTACAAGCATCTGAATCATGTTTCGAT
1691 TTAATT-----T
319 TTAATTAGAAAT
* * ** * * ** * * * *
1698 GAA---A-AAAATAGGAAAAGCGCA-ATTTGAAGTGTGGGAAGTCCTTCAATCTTTTAGGCGTTG
1 TAATTCAGAAAATATGAAAAATG-ATATTAGAAGCGTGAAAAGTCCTCCAATATTTTTGG-GTTA
* * * * ** **
1758 AATTATATATTTTTTATGATTATT-TTCACTAGAAATTGAGGAAAAATCTTTCAAGTCAATTTTT
64 AATTATATATTTTTTATGAGTATTATGC-CCAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTT
* ** * * * **
1822 GTAAAA-TTTAGCCGAAATCG-TGTATTAACCATCACGGTATTTGGCTAAAAATGTTTTTC-GGG
128 GCAAAATTTTAGCCGAAATCGATACATT-ATCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGG
* * * * *** *
1884 A-CCTGGCTCAATTTTACATGATTTTTGGTGCCAAGACTCC-TTGAAATATATATAT
192 ACCCCGG-TTAGTTTTGCATGATTTTTGGCATCAAGACTCCTTTGAAATATCTATAT
1939 ATATATATAT
Statistics
Matches: 990, Mismatches: 194, Indels: 100
0.77 0.15 0.08
Matches are distributed among these distances:
313 33 0.03
314 3 0.00
315 1 0.00
317 8 0.01
318 21 0.02
319 91 0.09
320 15 0.02
321 12 0.01
322 17 0.02
323 121 0.12
324 4 0.00
326 43 0.04
327 12 0.01
328 8 0.01
329 1 0.00
330 13 0.01
331 61 0.06
332 112 0.11
333 91 0.09
334 187 0.19
335 28 0.03
336 2 0.00
337 106 0.11
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (330 bp):
TAATTCAGAAAATATGAAAAATGATATTAGAAGCGTGAAAAGTCCTCCAATATTTTTGGGTTAAA
TTATATATTTTTTATGAGTATTATGCCCAAAAATTGAGGAAAAAAATTTCGGGTCAATTTTTGCA
AAATTTTAGCCGAAATCGATACATTATCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGGACCC
CGGTTAGTTTTGCATGATTTTTGGCATCAAGACTCCTTTGAAATATCTATATTCATCTAATCAAA
TCTCAGCCACATTGGATTTAAGAATTTGTTTTTACAAGCATCTGAATCATGTTTCGATTTAATTA
GAAAT
Found at i:1936 original size:2 final size:2
Alignment explanation
Indices: 1929--1958 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1919 ACTCCTTGAA
1929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1959 TCATCTAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3027 original size:119 final size:119
Alignment explanation
Indices: 2896--3138 Score: 477
Period size: 119 Copynumber: 2.0 Consensus size: 119
2886 TTGACGTTGA
*
2896 ATTTTATATATATTTTTGATATTTTTGCCAAAAACTGAGGAAAAATCTTTCGGGTCATTTTTACT
1 ATTTTATATATATTTTTGATATTTTTGCCAAAAACTGAGAAAAAATCTTTCGGGTCATTTTTACT
2961 ATCATGAGTTTTTGGCTAAAAACGTGTTCCGGGTCCCCGGCTCAGTTTTGCATG
66 ATCATGAGTTTTTGGCTAAAAACGTGTTCCGGGTCCCCGGCTCAGTTTTGCATG
3015 ATTTTATATATATTTTTGATATTTTTGCCAAAAACTGAGAAAAAATCTTTCGGGTCATTTTTACT
1 ATTTTATATATATTTTTGATATTTTTGCCAAAAACTGAGAAAAAATCTTTCGGGTCATTTTTACT
3080 ATCATGAGTTTTTGGCTAAAAACGTGTTCCGGGTCCCCGGCTCAGTTTTGCATG
66 ATCATGAGTTTTTGGCTAAAAACGTGTTCCGGGTCCCCGGCTCAGTTTTGCATG
3134 ATTTT
1 ATTTT
3139 TGGCGCTGAG
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 123 1.00
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.41
Consensus pattern (119 bp):
ATTTTATATATATTTTTGATATTTTTGCCAAAAACTGAGAAAAAATCTTTCGGGTCATTTTTACT
ATCATGAGTTTTTGGCTAAAAACGTGTTCCGGGTCCCCGGCTCAGTTTTGCATG
Found at i:8455 original size:17 final size:17
Alignment explanation
Indices: 8433--8466 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8423 TGATGAATAT
8433 GGCACAACACTTCGTAA
1 GGCACAACACTTCGTAA
**
8450 GGCACATGACTTCGTAA
1 GGCACAACACTTCGTAA
8467 AAGCTTCACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (17 bp):
GGCACAACACTTCGTAA
Found at i:12820 original size:332 final size:327
Alignment explanation
Indices: 12164--13192 Score: 1138
Period size: 332 Copynumber: 3.1 Consensus size: 327
12154 AAATGAACCA
* *
12164 AAAGATTTTTCCTCAATTTTT-GACAAAAATACTCAAAAAATATATATAATTCAATGCCAAAAAG
1 AAAGATATTTCCTCAATTTTTGGA-AAAAATACTCATAAAA-ATATATAATTCAAT-CCAAAAA-
* * * * *
12228 ATTGGAGGAC-TTTCATGCTTTTAATATCATTTTTAATATTTTTTCTGAATTAATTTCTAATTAA
62 ATTGAAGGACTTTTCACGCTTCTAATATCATTTTTACTATTTTATCTGAATTAATTTCTAATTAA
* * * *
12292 ATCGAAACAAGATTCAGATGCACATAAAAAAAAATCTTTAAATCCAATGTGGCTGAGATTTGATT
127 ATCGAAACAAGATTCAAATGCACGTAAAAACAAATCATTAAATCCAATGTGGCTGAGATTT-ATT
* **
12357 AGATGAATAAAGATATTTCAAGGAGTCTCAGCGTCAAAAATCATGCAAAACAGAGTTGTGGC-CC
191 AGATGAATAAAGATATTTCAAGGAGTCTTAGCGTCAAAAATCATGCAAAACAGA---GTCACACC
* * * ** * *
12421 T-GAAACGCATTTTTAACCAAAAATTGTGATGGTTAGTACACGACTTCGGCTAAAATTTTGCAAA
253 TCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGAACACGATTTCGGCTAAAATTTTGCAAA
12485 AATTGACCCG
318 AATTGACCCG
** *
12495 AAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAATATATAATTTGAGAT-CAAAAATA
1 AAAGATATTTCCTCAATTTTTGGAAAAAATACTCATAAAAATATATAA-TTCA-ATCCAAAAA-A
* * * * *
12559 TTGAAGGGCTTTTAACGCTTCTAATATTATTTTTTCTATTTTGATCTGAATTTATTTCTAATTAA
63 TTGAAGGACTTTTCACGCTTCTAATATCATTTTTACTATTTT-ATCTGAATTAATTTCTAATTAA
* * * * *
12624 ATCGAAATAAGATTTAAATGCTCGTAAAAACAAATCATTAAATCTAATGTGGCTGATATTTACTT
127 ATCGAAACAAGATTCAAATGCACGTAAAAACAAATCATTAAATCCAATGTGGCTGAGATTTA-TT
* * * * * *
12689 AGATGAATATAGATATTTCAAAGAGTCTTGGC-ACAAAAAATCATGCAAAACTGAGTCACACATC
191 AGATGAATAAAGATATTTCAAGGAGTCTTAGCGTC-AAAAATCATGCAAAACAGAGTCACACCTC
* * * *
12753 GGAACGCGTTTTTAGCCGAAAACCGTGATGGTTAGAACACAATTTTGCCTAAAATTTTGCAAAAA
255 GGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGAACACGATTTCGGCTAAAATTTTGC-AAAA
12818 ATTGACCCG
319 ATTGACCCG
* * **
12827 -AA-ATACTTTTCTCAATTTCTATAAAAAATACTCATAAAAAATATATAATTCAATGCCAAAAAA
1 AAAGATA-TTTCCTCAATTTTTGGAAAAAATACTCAT-AAAAATATATAATTCAAT-CCAAAAAA
* * * * * ** * *
12890 TTGAAAGCCTTTTTCACGATTCTAATATCGTTTTTCCTATTTTATTTCCAAATTAATTGCTGATT
63 TTGAAGGAC-TTTTCACGCTTCTAATATCATTTTTACTATTTTA--TCTGAATTAATTTCTAATT
* *
12955 AAATCGAAACAAGATTCAAATGCACGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGG
125 AAATCGAAACAAGATTCAAATGCACGTAAAAACAAATCATTAAATCCAATGTGGCTGAGATTT-A
* * * * * **
13020 TTAGATGAAAAAAGATATTTCAAGGAGCCTTCGCGTCAAAAATCATGCAAAACAAAATCGTGACC
189 TTAGATGAATAAAGATATTTCAAGGAGTCTTAGCGTCAAAAATCATGCAAAACAGAGTC-ACACC
* * *
13085 CCGGAACGCGTTTTTAGCCAAAAACCGTGATTGTTAGAACACGATTTCGGCTAAATTTTTGCAAA
253 TCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGAACACGATTTCGGCTAAAATTTTGCAAA
*
13150 AGTTGACCCG
318 AATTGACCCG
* * *
13160 AAAGATATTTTCTTAATTTTTGGATAAAATACT
1 AAAGATATTTCCTCAATTTTTGGAAAAAATACT
13193 ATTCCCTTCG
Statistics
Matches: 580, Mismatches: 96, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
329 3 0.01
330 29 0.05
331 151 0.26
332 182 0.31
333 131 0.23
334 81 0.14
335 3 0.01
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (327 bp):
AAAGATATTTCCTCAATTTTTGGAAAAAATACTCATAAAAATATATAATTCAATCCAAAAAATTG
AAGGACTTTTCACGCTTCTAATATCATTTTTACTATTTTATCTGAATTAATTTCTAATTAAATCG
AAACAAGATTCAAATGCACGTAAAAACAAATCATTAAATCCAATGTGGCTGAGATTTATTAGATG
AATAAAGATATTTCAAGGAGTCTTAGCGTCAAAAATCATGCAAAACAGAGTCACACCTCGGAACG
CGTTTTTAGCCAAAAACCGTGATGGTTAGAACACGATTTCGGCTAAAATTTTGCAAAAATTGACC
CG
Found at i:14755 original size:330 final size:330
Alignment explanation
Indices: 13481--15122 Score: 1537
Period size: 330 Copynumber: 5.0 Consensus size: 330
13471 GATTTGATAT
* * * * * *
13481 CAAAAAGATTGAAGGGCTTTTAAAC-CTTCTAATATTGTTTTTCTTATTTTTAT-CTGAATTAAT
1 CAAAAAGATTGAAGGACTTTT-CACGCTTTTAATATCGTTTTTCATATTTTT-TCCTAAATTAAT
* * * * * *
13544 TTCT-ATTAAATTGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATATGTCTG
64 TTCTAATTAAATCGAAACAAGATTCAGATACACGTAAAAAAAAAT-CTTAAATCCAATGTGGCTG
* * * * * *
13608 AGATTTGGTTAGA--AGTATAGATATTTCAAGGAGACTTGGCACCAAAAAT-ATG------TGAG
128 AGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAG
* * * * * *
13664 TC-AGGCCTCGGAACAG-GTTTTTAG-CGAAAACCGTGATGGTTAGTACACAATTTTGGCTAAAA
193 CCGAGACCTCGGAAC-GCGTTTTTAGCCAAAAACTGTGAT-GTTAGTACACGATTTCGGCTAAAA
* * *
13726 TTTTACAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAGCA-AAAATACTCATAAAAATATA
256 TTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTT-GGATAAAATACTCATAAAAATATA
*
13790 TAATTCAACAC
320 TAATTCAACGC
* * * * *
13801 CAAAAATATTGAAAGCCTTTTTCACGCTTTTAATATCGTTTTTCCTATTTTATTTCC-AAATTTA
1 CAAAAAGATTGAAGGAC-TTTTCACGCTTTTAATATCGTTTTTCATA-TTT-TTTCCTAAATTAA
* * * * * *
13865 TTGCTGATT-AATCGAAACAAAATTCAGATACACGTAAAAACAAATCCTTAAGTCCAATGTAGCT
63 TTTCTAATTAAATCGAAACAAGATTCAGATACACGTAAAAAAAAAT-CTTAAATCCAATGTGGCT
* * * *
13929 GAGATTTGGTTAGATGAATAAAGATATTTCAAGGACTCTCGACGCCAAAAATCATGCAAAACAGA
127 GAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGA
** * * * *
13994 GCCCTG-GCTACGGAACGCGATTTTAGCCAAAAACCGTGATTTTCAATCACGTACACGATTTCGG
192 GCCGAGACCT-CGGAACGCGTTTTTAGCCAAAAACTGTGA-TGT---T-A-GTACACGATTTCGG
* ** *
14058 CTAAAATTTTGCCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCACAATACTCATAAA
250 CTAAAATTTTG-CAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAA
*
14123 GAATATATAATTTAACGC
314 -AATATATAATTCAACGC
14141 CAAAAAGATTGAAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTT-CTGAAA-TAATT
1 CAAAAAGATTGAAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTCCT-AAATTAATT
* * * * *
14204 TCTAAATTAAATAGAAAC-A-A-TC---T---CGTAAAAACAAATTCTTAAATGCAATGTGACTA
65 TCT-AATTAAATCGAAACAAGATTCAGATACACGTAAAAA-AAAATCTTAAATCCAATGTGGCTG
* *
14260 AGATTTTATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACTGAG
128 AGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAG
** * * * *
14325 TTGGGGTCC-CGAAACGCGTTTTTAGCCAAAAA-TCGTGATGATTAGTACACGATTTTGGCTAAA
193 -CCGAGACCTCGGAACGCGTTTTTAGCCAAAAACT-GTGATG-TTAGTACACGATTTCGGCTAAA
* * ** * * *
14388 ATTTTGTAAAAAATGAGTCGAAAAATATTTGCTCAATTTTTGGATAAAATGCTCATAAAATATAT
255 ATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAA-ATAT
*
14453 ATAATGT-AACGT
319 ATAAT-TCAACGC
* * *
14465 TAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTCCTAAATTGATTT
1 CAAAAAGATTGAAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTCCTAAATTAATTT
**
14530 CTAATTAAATCGAAACAAGATTCAGATACTTGTAAAAAAAAAT-TT-AATCCAATGTGGCTGAGA
66 CTAATTAAATCGAAACAAGATTCAGATACACGTAAAAAAAAATCTTAAATCCAATGTGGCTGAGA
* * * * * * * *
14593 TTTGATTAGAAGTATATGGATATATCAAGGAGTCTTGACGCCAAAAATCATACAAAACTGAACCA
131 TTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCG
* * * *
14658 AGACCTCGGAACGCTTTTTTAGCCAAAAACTATGATAGTTATTACACGATTTCGACTAAAATTTT
196 AGACCTCGGAACGCGTTTTTAGCCAAAAACTGTGAT-GTTAGTACACGATTTCGGCTAAAATTTT
* * *
14723 GTAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGTTAAAATACTCATATAAATATATAATT
260 GCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAATATATAATT
14788 CAACGC
325 CAACGC
* * * * * *
14794 CAAAAAGATTGAAGGGCTTTTGACG-TATCTAATATCGCTTTTCCTATTTTTTCC-GAATTAATT
1 CAAAAAGATTGAAGGACTTTTCACGCT-TTTAATATCGTTTTTCATATTTTTTCCTAAATTAATT
* * * **
14857 TCTAATTAAATTGAAACAAGATTCCGATGCACGTAAAAACCAATCCTTAAATCCAATGTGGCTGA
65 TCTAATTAAATCGAAACAAGATTCAGATACACGTAAAAAAAAAT-CTTAAATCCAATGTGGCTGA
** * *
14922 GATTTGATTAGATGAATATAGATATTTCAAATAGTCTCGGA-GCAAAAAATCATGCAAAATTGAG
129 GATTTGATTAGATGAATATAGATATTTCAAGGAGTCTC-GACGCCAAAAATCATGCAAAACTGAG
* * * * * *
14986 GCGGGTA-CTCGGAACGCATTTTTAGCCAAAAACCGTGATTGTTAATTAGTACAGGATTTCGGTT
193 CCGAG-ACCTCGGAACGCGTTTTTAGCCAAAAACTGTGA-TG----TTAGTACACGATTTCGGCT
* * * *
15050 AAAATTTTGCAAAAAAAAATTGACTCTGAAAGAT-TTCTCCTCAATTTTTGGCTAAAATTCTTAT
252 AAAATTTTGC----AAAAATTGAC-CCGAAAGATATT-TCCTCAATTTTTGGATAAAATACTCAT
15114 AAAAATATA
311 AAAAATATA
15123 CTCCCTTTAT
Statistics
Matches: 1084, Mismatches: 167, Indels: 122
0.79 0.12 0.09
Matches are distributed among these distances:
320 16 0.01
321 22 0.02
322 73 0.07
323 7 0.01
324 150 0.14
325 38 0.04
326 2 0.00
327 3 0.00
328 46 0.04
329 62 0.06
330 274 0.25
331 112 0.10
332 23 0.02
333 20 0.02
334 1 0.00
335 24 0.02
336 4 0.00
337 11 0.01
338 32 0.03
339 95 0.09
340 69 0.06
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (330 bp):
CAAAAAGATTGAAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTCCTAAATTAATTT
CTAATTAAATCGAAACAAGATTCAGATACACGTAAAAAAAAATCTTAAATCCAATGTGGCTGAGA
TTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCG
AGACCTCGGAACGCGTTTTTAGCCAAAAACTGTGATGTTAGTACACGATTTCGGCTAAAATTTTG
CAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAATATATAATTC
AACGC
Found at i:17741 original size:4 final size:4
Alignment explanation
Indices: 17732--17761 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
17722 CTACTATTCT
17732 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
17762 CACACACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:21262 original size:81 final size:81
Alignment explanation
Indices: 21175--21337 Score: 326
Period size: 81 Copynumber: 2.0 Consensus size: 81
21165 ACTTAACCCT
21175 TTTTTTGTTCGATTTTCTGATTAAGATGATTCATGTGTCTATTAAAAGGTAATTTCGTGATCTAC
1 TTTTTTGTTCGATTTTCTGATTAAGATGATTCATGTGTCTATTAAAAGGTAATTTCGTGATCTAC
21240 AACTTTCATTAATGAC
66 AACTTTCATTAATGAC
21256 TTTTTTGTTCGATTTTCTGATTAAGATGATTCATGTGTCTATTAAAAGGTAATTTCGTGATCTAC
1 TTTTTTGTTCGATTTTCTGATTAAGATGATTCATGTGTCTATTAAAAGGTAATTTCGTGATCTAC
21321 AACTTTCATTAATGAC
66 AACTTTCATTAATGAC
21337 T
1 T
21338 CAAAAGCCAA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (81 bp):
TTTTTTGTTCGATTTTCTGATTAAGATGATTCATGTGTCTATTAAAAGGTAATTTCGTGATCTAC
AACTTTCATTAATGAC
Found at i:41737 original size:24 final size:24
Alignment explanation
Indices: 41705--41752 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
41695 ATATATTGTT
41705 TAGAAACTTAATAAATAAAGTCGA
1 TAGAAACTTAATAAATAAAGTCGA
41729 TAGAAACTTAATAAATAAAGTCGA
1 TAGAAACTTAATAAATAAAGTCGA
41753 GGAAGAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.25
Consensus pattern (24 bp):
TAGAAACTTAATAAATAAAGTCGA
Found at i:42727 original size:18 final size:19
Alignment explanation
Indices: 42704--42741 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
42694 TCAAAACTCG
42704 ATCGAGCTCAAG-TCGAGT
1 ATCGAGCTCAAGCTCGAGT
*
42722 ATCGAGCTCGAGCTCGAGT
1 ATCGAGCTCAAGCTCGAGT
42741 A
1 A
42742 GCTCACTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (19 bp):
ATCGAGCTCAAGCTCGAGT
Found at i:45719 original size:6 final size:6
Alignment explanation
Indices: 45707--45750 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
45697 TGGAGGGAGA
* * * *
45707 GGAAGG GGGAGG GGAAGG GGAAGA GGCAGG GGAAGA GGAAGG GG
1 GGAAGG GGAAGG GGAAGG GGAAGG GGAAGG GGAAGG GGAAGG GG
45751 GAGAGGGAGG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.32, C:0.02, G:0.66, T:0.00
Consensus pattern (6 bp):
GGAAGG
Found at i:45722 original size:12 final size:12
Alignment explanation
Indices: 45701--45756 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 12
45691 GGAACGTGGA
45701 GGGAGAGGAAGG
1 GGGAGAGGAAGG
*
45713 GGGAGGGGAAGG
1 GGGAGAGGAAGG
* *
45725 GGAAGAGGCAGG
1 GGGAGAGGAAGG
*
45737 GGAAGAGGAAGG
1 GGGAGAGGAAGG
45749 GGGAGAGG
1 GGGAGAGG
45757 GAGGTTTGGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.32, C:0.02, G:0.66, T:0.00
Consensus pattern (12 bp):
GGGAGAGGAAGG
Found at i:57878 original size:2 final size:2
Alignment explanation
Indices: 57871--57898 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
57861 TACTGTATCC
57871 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57899 GTATGTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65146 original size:2 final size:2
Alignment explanation
Indices: 65139--65173 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
65129 TCTTTACCTC
65139 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65174 AGTAGTAGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:79352 original size:72 final size:72
Alignment explanation
Indices: 79268--79411 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
79258 ATATTAATTA
79268 ACGTTATCAATTATCCATATATAGATGTAGTGATACAATTGTATATATGCTATATTAATAACAAA
1 ACGTTATCAATTATCCATATATAGATGTAGTGATACAATTGTATATATGCTATATTAATAACAAA
79333 AATTGAT
66 AATTGAT
79340 ACGTTATCAATTATCCATATATAGATGTAGTGATACAATTGTATATATGCTATATTAATAACAAA
1 ACGTTATCAATTATCCATATATAGATGTAGTGATACAATTGTATATATGCTATATTAATAACAAA
79405 AATTGAT
66 AATTGAT
79412 TTGCAATGAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.38
Consensus pattern (72 bp):
ACGTTATCAATTATCCATATATAGATGTAGTGATACAATTGTATATATGCTATATTAATAACAAA
AATTGAT
Found at i:79562 original size:26 final size:26
Alignment explanation
Indices: 79527--79580 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
79517 ATATAGATTA
79527 TGCTCATATATATTATTTTATAGTGT
1 TGCTCATATATATTATTTTATAGTGT
79553 TGCTCATATATATTATTTTATAGTGT
1 TGCTCATATATATTATTTTATAGTGT
79579 TG
1 TG
79581 ATTAAATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (26 bp):
TGCTCATATATATTATTTTATAGTGT
Found at i:79876 original size:2 final size:2
Alignment explanation
Indices: 79869--79897 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
79859 CCCTCTCCTC
79869 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
79898 TTTAATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80561 original size:28 final size:28
Alignment explanation
Indices: 80504--80562 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
80494 CTAGCCATTT
*** *
80504 AAAAAGAAATAAAATTATCTTTCTTTCA
1 AAAAAGAAATAAAATTATAAATCTTCCA
80532 AAAAAGAAATAAAATTA-AAATCTATCCA
1 AAAAAGAAATAAAATTATAAATCT-TCCA
80560 AAA
1 AAA
80563 GCAATTAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 3 0.12
28 23 0.88
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.27
Consensus pattern (28 bp):
AAAAAGAAATAAAATTATAAATCTTCCA
Found at i:81310 original size:16 final size:17
Alignment explanation
Indices: 81291--81328 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
81281 TATCGATTAA
81291 TTTTAATTAAAATC-TT
1 TTTTAATTAAAATCATT
*
81307 TTTTATTTAAAATCATT
1 TTTTAATTAAAATCATT
81324 TTTTA
1 TTTTA
81329 CCTTCTAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTAATTAAAATCATT
Found at i:81705 original size:30 final size:30
Alignment explanation
Indices: 81647--81705 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
81637 TACTAAACAC
**
81647 ACAAACAAATAAATTACAAAGATTACTCAT
1 ACAAACAAATAAATTACAAAGAAAACTCAT
*
81677 ACAAACACATAAATTACAAAGAAAACTCA
1 ACAAACAAATAAATTACAAAGAAAACTCA
81706 CATTCCGTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.59, C:0.19, G:0.03, T:0.19
Consensus pattern (30 bp):
ACAAACAAATAAATTACAAAGAAAACTCAT
Found at i:83356 original size:228 final size:228
Alignment explanation
Indices: 82947--83365 Score: 705
Period size: 228 Copynumber: 1.8 Consensus size: 228
82937 TTATCTAAAA
* * *
82947 GGGTTATTATTTGATACACCGGCGGTGTAAATTTTGGACTCCACAAGCGGGTTGTGGAGTTGATA
1 GGGTAATTATTTGATACACCGGAGGTGTAAATTTTGGACTCCACAAGCGGGTTGTGGAGTTGACA
* *
83012 CATGTCCAATTTTTGAATTAATTAAGTTTTAAATATTTCAATATAGTCCCTAGAAGACACATGTT
66 CATGTCCAATTTTTGAATTAATTAAGTTTTAAACATTTCAATATAGTCCCTAGAAGACACATGTC
* * *
83077 ACCCTTCAGGACCCGCTTGTGTAGTTTGCGAAACTCCACTGACGGTGTATTGTATAATTTGTCTA
131 ACCCTTCAGGACCCGCTTGTGTAATCTGCGAAACTCCACTGACGATGTATTGTATAATTTGTCTA
83142 TCTAAAATACTTTCCTATTATCTAATAAAAGAT
196 TCTAAAATACTTTCCTATTATCTAATAAAAGAT
83175 GGGTAATTATTTGATACACCGGAGGTGTAAATTTTGGACTCCACAAGCGGGTTGTGGAGTTGACA
1 GGGTAATTATTTGATACACCGGAGGTGTAAATTTTGGACTCCACAAGCGGGTTGTGGAGTTGACA
* * *
83240 TATGTCCATTTTTTGAATTAATTAAGTTTTAAACATTTCAATCTAGTCCCTA-AATGACACATGT
66 CATGTCCAATTTTTGAATTAATTAAGTTTTAAACATTTCAATATAGTCCCTAGAA-GACACATGT
* *
83304 CACCCTTCAGGACCCGCTTGTGTAATCTGCTAAACTTCACTGACGATGTATTGTATAATTTG
130 CACCCTTCAGGACCCGCTTGTGTAATCTGCGAAACTCCACTGACGATGTATTGTATAATTTG
83366 CCATAAAAGA
Statistics
Matches: 177, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
227 2 0.01
228 175 0.99
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (228 bp):
GGGTAATTATTTGATACACCGGAGGTGTAAATTTTGGACTCCACAAGCGGGTTGTGGAGTTGACA
CATGTCCAATTTTTGAATTAATTAAGTTTTAAACATTTCAATATAGTCCCTAGAAGACACATGTC
ACCCTTCAGGACCCGCTTGTGTAATCTGCGAAACTCCACTGACGATGTATTGTATAATTTGTCTA
TCTAAAATACTTTCCTATTATCTAATAAAAGAT
Found at i:86186 original size:16 final size:16
Alignment explanation
Indices: 86165--86201 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
86155 TCTTTCTTTT
86165 CAAATATTTAAAATGG
1 CAAATATTTAAAATGG
86181 CAAATATTTAAAATGG
1 CAAATATTTAAAATGG
86197 CAAAT
1 CAAAT
86202 TTCACTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (16 bp):
CAAATATTTAAAATGG
Found at i:101056 original size:48 final size:48
Alignment explanation
Indices: 100997--101145 Score: 273
Period size: 48 Copynumber: 3.1 Consensus size: 48
100987 TTCCTTATTT
*
100997 TTCA-CTTTTTTACCAGATGCAACCAGAGAATCATCAGGAATTTGATG
1 TTCATCTTTTTTATCAGATGCAACCAGAGAATCATCAGGAATTTGATG
*
101044 TTCATCTTTTTTATCAGATGCAACCAGAGAATCATCAGAAATTTGATG
1 TTCATCTTTTTTATCAGATGCAACCAGAGAATCATCAGGAATTTGATG
101092 TTCATCTTTTTTATCAGATGCAACCAGAGAATCATCAGGAATTTGATG
1 TTCATCTTTTTTATCAGATGCAACCAGAGAATCATCAGGAATTTGATG
101140 TTCATC
1 TTCATC
101146 AATGAAAGAA
Statistics
Matches: 98, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
47 4 0.04
48 94 0.96
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (48 bp):
TTCATCTTTTTTATCAGATGCAACCAGAGAATCATCAGGAATTTGATG
Found at i:111570 original size:19 final size:18
Alignment explanation
Indices: 111542--111577 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
111532 ACCCTAAACC
*
111542 CTAATATAACCACAAAGA
1 CTAATATAACAACAAAGA
111560 CTAACTATAACAACAAAG
1 CTAA-TATAACAACAAAG
111578 TGCCCTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.22, G:0.06, T:0.17
Consensus pattern (18 bp):
CTAATATAACAACAAAGA
Found at i:113276 original size:46 final size:46
Alignment explanation
Indices: 113209--113298 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
113199 ACCCATGCAT
113209 CAATTAGACACAAAACCCAAGAAAATAATGTATTAAAAAAAGTCAC
1 CAATTAGACACAAAACCCAAGAAAATAATGTATTAAAAAAAGTCAC
113255 CAATTAGACACAAAACCCAAGAAAATAATGTATTAAAAAAAGTC
1 CAATTAGACACAAAACCCAAGAAAATAATGTATTAAAAAAAGTC
113299 TAATGATTGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.18
Consensus pattern (46 bp):
CAATTAGACACAAAACCCAAGAAAATAATGTATTAAAAAAAGTCAC
Found at i:118260 original size:31 final size:32
Alignment explanation
Indices: 118177--118288 Score: 208
Period size: 32 Copynumber: 3.5 Consensus size: 32
118167 ACAGCTACCA
*
118177 TATAAATATAGTAATGTATACTCCAGAATCCT
1 TATAAATATAGTAATGTGTACTCCAGAATCCT
118209 TATAAATATAGTAATGTGTACTCCAGAATCCT
1 TATAAATATAGTAATGTGTACTCCAGAATCCT
118241 TATAAATATAGT-ATGTGTACTCCAGAATCCT
1 TATAAATATAGTAATGTGTACTCCAGAATCCT
118272 TATAAATATAGTAATGT
1 TATAAATATAGTAATGT
118289 ATTTATCCAC
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
31 31 0.40
32 47 0.60
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (32 bp):
TATAAATATAGTAATGTGTACTCCAGAATCCT
Found at i:118767 original size:125 final size:125
Alignment explanation
Indices: 118545--118916 Score: 678
Period size: 125 Copynumber: 3.0 Consensus size: 125
118535 GATTTAATTA
*
118545 TTGAGGAGACAAGGGAGCAGAGGATAGCACGTGGACGATGAGTAAAGTATAACTCAGAGAGTTTC
1 TTGAGGAGACACGGGAGCAGAGGATAGCACGTGGACGATGAGTAAAGTATAACTCAGAGAGTTTC
118610 CCCCATCTATACACGTGTTTCATTCCTACTAATATTGAATTCAACAAACGAAACGACAAC
66 CCCCATCTATACACGTGTTTCATTCCTACTAATATTGAATTCAACAAACGAAACGACAAC
* *
118670 TTGAGGAGACACGGGAGCAGAGGATAGCGCGTGGACAATGAGTAAAGTATAACTCAGAGAGTTTC
1 TTGAGGAGACACGGGAGCAGAGGATAGCACGTGGACGATGAGTAAAGTATAACTCAGAGAGTTTC
*
118735 CCCCATCTATACACGTGTTTCATTCCTACTAATATAGAATTCAACAAACGAAACGACAAC
66 CCCCATCTATACACGTGTTTCATTCCTACTAATATTGAATTCAACAAACGAAACGACAAC
118795 TTGAGGAGACACGGGAGCAGAGGATAGCACGTGGACGATGAGTAAAGTATAACTCAGAGAGTTTC
1 TTGAGGAGACACGGGAGCAGAGGATAGCACGTGGACGATGAGTAAAGTATAACTCAGAGAGTTTC
*
118860 CCCCATCTATACACGTGTTTCATT-C--CTAATATTGAATTCAACGAACGAAACGACAAC
66 CCCCATCTATACACGTGTTTCATTCCTACTAATATTGAATTCAACAAACGAAACGACAAC
118917 ATCATATAAA
Statistics
Matches: 239, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
122 30 0.13
124 1 0.00
125 208 0.87
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (125 bp):
TTGAGGAGACACGGGAGCAGAGGATAGCACGTGGACGATGAGTAAAGTATAACTCAGAGAGTTTC
CCCCATCTATACACGTGTTTCATTCCTACTAATATTGAATTCAACAAACGAAACGACAAC
Done.