Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010251.1 Corchorus capsularis cultivar CVL-1 contig10272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66905

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351--386
14
2.4
15
86
13
56
0
66
0
33
0.92
358--386
14
2.1
14
100
0
58
0
65
0
34
0.93
515--550
16
2.3
16
90
4
56
13
5
22
58
1.56
9791--9825
18
1.9
18
88
11
54
22
28
8
40
1.84
15184--15613
227
1.9
225
89
0
662
28
18
18
34
1.94
20803--20855
2
26.5
2
100
0
106
49
0
50
0
1.00
22454--22481
14
2.0
14
100
0
56
42
21
14
21
1.88
22877--22914
17
2.1
18
85
9
51
76
2
18
2
1.02
26211--26245
12
2.9
12
91
0
52
20
0
22
57
1.41
32520--32550
15
2.1
15
93
0
53
38
3
25
32
1.72
45357--45514
78
2.0
78
96
0
289
24
3
30
41
1.70
45607--45637
13
2.4
13
100
0
62
58
12
6
22
1.58
45936--46006
31
2.3
31
97
2
135
46
12
7
33
1.69
54353--55039
339
2.0
334
80
6
762
37
14
12
34
1.85
55759--55836
29
2.7
28
77
15
86
39
29
14
16
1.88
66304--66330
1
27.0
1
100
0
54
0
0
0
100
0.00

Tables:   1

The End!