Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010252.1 Corchorus capsularis cultivar CVL-1 contig10273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35774

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
563--615
27
2.0
27
85
7
74
39
9
1
49
1.46
2159--2204
21
2.2
21
84
7
58
41
26
8
23
1.83
2187--2285
45
2.2
45
89
3
146
47
19
8
25
1.76
2944--3103
79
2.0
79
98
0
311
36
24
9
30
1.87
4144--4200
2
28.0
2
82
3
69
42
0
8
49
1.34
6001--6057
28
2.0
29
90
10
91
54
5
12
28
1.59
6280--6322
11
3.9
11
90
0
68
46
6
4
41
1.51
6276--6322
22
2.1
22
96
0
85
46
6
4
42
1.48
7138--7166
5
6.0
5
92
8
51
82
0
0
17
0.66
7895--7925
15
2.1
15
93
0
53
0
22
12
64
1.27
8231--8425
105
1.8
104
82
4
246
36
23
29
9
1.87
8508--8549
21
2.0
21
86
9
59
57
9
33
0
1.31
10844--10874
2
15.5
2
100
0
62
51
0
0
48
1.00
15041--15205
86
1.9
86
97
0
312
24
7
21
45
1.78
16416--16643
48
4.8
48
90
0
348
28
14
15
42
1.86
18954--18997
22
2.0
22
100
0
88
36
9
18
36
1.82
20907--20944
3
12.7
3
100
0
76
34
34
0
31
1.58
25249--25277
7
4.1
7
100
0
58
72
0
27
0
0.85
28071--28116
4
10.5
4
82
17
56
67
0
0
32
0.91
28072--28117
9
5.1
9
100
0
92
65
0
0
34
0.93
28071--28134
27
2.4
28
84
7
87
65
0
1
32
1.02

Tables:   1

The End!