Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010256.1 Corchorus capsularis cultivar CVL-1 contig10277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58614

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2847--2962
59
1.9
61
87
5
173
30
12
16
40
1.86
12369--12415
24
2.0
24
100
0
94
36
12
12
38
1.82
29630--29917
105
2.6
111
84
8
446
45
10
32
11
1.74
29573--29890
105
3.0
105
83
8
419
43
9
35
11
1.75
32574--32598
1
25.0
1
100
0
50
100
0
0
0
0.00
33669--33834
31
5.5
31
68
16
132
32
19
19
27
1.97
33673--33834
60
2.7
60
93
0
279
33
19
19
27
1.96
33865--33997
31
4.4
31
76
3
144
25
19
16
38
1.92
33895--34059
60
2.8
60
81
5
208
29
17
16
36
1.92
41207--41238
15
2.1
15
94
0
55
21
40
9
28
1.84
41628--41661
16
2.1
15
89
10
50
67
0
32
0
0.91
48498--48533
18
2.0
18
100
0
72
33
16
27
22
1.95
49550--49806
129
2.0
129
97
0
487
41
26
15
16
1.88
54206--54407
17
12.1
17
88
0
239
31
32
14
21
1.93
56258--56348
36
2.5
36
94
0
155
14
34
27
24
1.94
57482--57542
25
2.4
24
78
13
68
21
22
36
19
1.95
57704--57735
12
2.7
12
95
0
55
75
3
0
21
0.95
57883--57923
3
14.0
3
84
5
57
68
0
0
31
0.90
58010--58260
15
15.7
15
71
11
151
21
30
26
21
1.99
58014--58259
33
7.6
33
79
8
206
21
30
25
21
1.99
58010--58167
48
3.3
48
89
0
235
22
30
26
20
1.98
58014--58248
81
2.9
80
78
12
273
21
31
25
22
1.98

Tables:   1

The End!