Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010259.1 Corchorus capsularis cultivar CVL-1 contig10280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77368

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5150--5216
3
22.3
3
96
0
125
32
1
0
65
1.02
14756--14792
18
2.1
17
90
5
56
21
2
13
62
1.44
14958--15197
120
2.0
120
98
0
462
44
11
10
32
1.76
16624--16650
2
13.5
2
100
0
54
0
0
48
51
1.00
17430--17514
43
2.0
43
90
4
136
49
12
14
23
1.77
25100--25138
20
2.0
20
100
0
78
61
15
7
15
1.55
29060--29104
16
2.9
15
93
3
72
40
8
2
48
1.47
29063--29104
15
2.7
16
92
3
68
40
9
2
47
1.49
30469--30501
14
2.3
15
89
5
50
78
6
3
12
1.04
30706--30771
33
2.0
33
96
0
123
50
21
10
18
1.77
36211--36294
22
3.8
22
81
13
84
36
10
10
41
1.75
36211--36294
44
1.9
44
85
0
114
36
10
10
41
1.75
36212--36310
44
2.2
44
80
3
101
36
10
11
42
1.74
36338--36380
22
2.0
22
85
0
59
30
20
11
37
1.89
36531--36588
23
2.5
23
81
10
66
37
12
8
41
1.73
36526--37133
22
27.8
22
69
10
246
36
15
9
38
1.80
37981--38012
16
2.0
16
93
0
55
71
0
0
28
0.86
39033--39138
33
3.2
33
90
4
162
9
40
34
15
1.79
39372--39416
9
5.1
9
94
5
83
22
0
0
77
0.76
39364--39416
17
3.1
16
81
13
61
18
1
0
79
0.83
39372--39416
17
2.6
17
92
3
72
22
0
0
77
0.76
39468--39535
26
2.6
26
84
9
93
35
1
8
54
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39545--39602
25
2.4
24
88
8
91
41
0
22
36
1.54
48825--48886
31
2.0
31
96
0
115
50
0
30
19
1.48
57659--57739
29
2.8
28
86
7
99
23
23
16
37
1.94
58433--58509
29
2.6
29
85
8
93
33
12
25
27
1.93
61561--61595
2
18.0
2
94
5
63
48
0
0
51
1.00
62533--62893
183
2.0
176
92
3
605
26
12
13
47
1.78
67196--67230
18
1.9
18
88
0
52
40
14
11
34
1.82
68734--68776
19
2.4
19
88
7
63
53
18
9
18
1.70
68804--68929
64
2.0
65
95
1
227
38
20
16
23
1.92
68915--68944
15
2.0
15
100
0
60
40
26
20
13
1.89
77304--77339
2
18.0
2
94
0
63
50
0
2
47
1.15

Tables:   1

The End!