genome.fa.s10262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010262.1 Corchorus capsularis cultivar CVL-1 contig10283, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66696

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124--159	17	2.1	17	94	0	63	44	0	0	55	0.99
128--176	17	3.1	15	80	19	55	46	0	0	53	1.00
584--616	17	1.9	17	93	0	57	30	0	3	66	1.06
716--746	14	2.2	14	100	0	62	25	19	25	29	1.99
6541--6623	39	2.1	39	82	8	98	63	18	10	7	1.48
6531--6637	45	2.3	46	82	4	117	60	16	14	7	1.56
10537--10569	15	2.2	15	94	0	57	27	9	15	48	1.74
11191--11306	58	2.0	58	100	0	232	18	17	24	39	1.92
14165--14189	6	4.2	6	100	0	50	32	16	16	36	1.90
15836--15893	2	30.0	2	73	13	50	41	5	3	50	1.42
18537--18906	178	2.1	174	79	7	392	36	14	14	34	1.87
19705--19778	23	3.2	23	75	11	87	58	4	8	29	1.46
19705--19802	47	2.1	46	96	1	178	56	4	9	30	1.50
19715--19801	23	3.7	24	76	15	101	56	4	9	29	1.51
20340--20373	17	1.9	18	94	5	61	0	5	17	76	0.98
20341--20386	17	2.6	18	80	16	51	2	6	21	69	1.22
20962--21002	2	20.5	2	94	0	73	46	0	0	53	1.00
21522--21708	88	2.1	89	90	3	299	47	4	14	34	1.64
21631--21775	77	1.9	76	83	9	192	46	6	14	32	1.71
33064--33097	17	2.0	17	100	0	68	23	0	11	64	1.26
35892--35921	6	5.0	6	91	0	51	16	3	46	33	1.64
37343--37367	12	2.1	12	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38481--38505	6	4.2	6	100	0	50	0	0	16	84	0.63
39343--39380	17	2.2	18	95	4	69	26	13	36	23	1.91
41525--41591	26	2.6	26	100	0	134	29	32	2	34	1.73
41504--41751	89	2.8	89	88	4	367	22	30	4	41	1.75
41612--41678	27	2.5	27	82	4	82	26	29	5	37	1.80
44868--44914	18	2.5	19	82	3	60	74	10	6	8	1.22
46087--46472	49	7.9	49	81	4	422	23	29	15	31	1.95
46092--46473	146	2.6	144	83	4	453	24	29	15	31	1.96
46086--46472	97	4.0	98	82	2	440	23	28	15	31	1.95
52371--52571	35	5.8	35	86	8	270	33	19	10	36	1.86
52549--52593	22	2.0	22	100	0	90	33	13	13	40	1.83
52514--52626	57	2.0	57	94	0	199	32	16	12	38	1.86
52479--52838	92	4.0	92	72	14	363	32	17	11	37	1.86
52571--52980	35	11.7	35	90	0	649	33	18	10	38	1.85
53422--53467	22	2.1	22	95	0	83	50	19	4	26	1.66
56432--56593	36	4.5	36	74	14	138	37	29	16	17	1.91
56432--56593	71	2.3	71	80	9	177	37	29	16	17	1.91
56760--56861	34	2.9	35	85	5	136	33	18	24	23	1.97
57998--58043	16	2.9	16	83	6	58	0	23	0	76	0.79
58751--58796	14	3.4	14	80	14	60	32	13	8	45	1.73
58873--58950	39	2.0	39	94	0	138	10	23	10	56	1.63
60861--60893	16	2.1	16	88	5	50	60	9	3	27	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62374--62412	20	1.9	21	89	5	62	56	0	20	23	1.42
62374--62413	21	1.9	21	85	10	55	57	0	20	22	1.41
63574--64207	35	18.7	35	80	11	544	33	18	10	37	1.85
63748--63792	22	2.0	22	100	0	90	33	13	13	40	1.83
63713--63825	57	2.0	57	92	0	190	33	16	11	38	1.85
63682--63864	92	2.0	88	91	4	294	32	17	11	38	1.86
63770--64214	35	12.7	35	89	0	656	33	18	10	37	1.85
64655--64698	22	2.0	22	90	0	70	54	18	0	27	1.44

Tables:   1

The End!