Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010268.1 Corchorus capsularis cultivar CVL-1 contig10289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4581
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:271 original size:20 final size:20

Alignment explanation


    Indices: 246--284  Score: 69
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        236 TCACTGCGTA

                                
        246 ATGGTTTATTTTGCAATGTT
          1 ATGGTTTATTTTGCAATGTT

                         *     
        266 ATGGTTTATTTTGTAATGT
          1 ATGGTTTATTTTGCAATGT

        285 CATATCAAGG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.21, C:0.03, G:0.21, T:0.56


Consensus pattern (20 bp):   
ATGGTTTATTTTGCAATGTT

Found at i:4394 original size:17 final size:17

Alignment explanation


    Indices: 4375--4406  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       4365 TTTAACAAAA

                             
       4375 AAAAG-AAACAAAAGAG
          1 AAAAGAAAACAAAAGAG

                            
       4391 AAAAGAAAACAAAAGA
          1 AAAAGAAAACAAAAGA

       4407 AATGAAAGTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    5  0.33
  17   10  0.67

ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00


Consensus pattern (17 bp):   
AAAAGAAAACAAAAGAG
Done.