Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010281.1 Corchorus capsularis cultivar CVL-1 contig10302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4919
ACGTcount: A:0.31, C:0.29, G:0.26, T:0.14
Found at i:96 original size:31 final size:31
Alignment explanation
Indices: 1--760 Score: 346
Period size: 31 Copynumber: 24.9 Consensus size: 31
* * *
1 CCGATGCCAAGGCAACGGGCCATCGGCAAATG
1 CCGACGCCAAGGCCATGGG-CATCGGCAAATG
*
33 CCGACGCCAAGGCCATGGGCCATCAGCAAATG
1 CCGACGCCAAGGCCATGGG-CATCGGCAAATG
65 CCGACGCCAAGGCCATGGGCATCGGCAAATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
*
96 CCGACGCCAAGGCCATGGACATCGGCAAATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* * ** *
127 CCAACGCCAAGGCCAAGGGCATCGGGGAGTG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* *
158 CCGACGCCAAGGCCATTGGCATCGGCAAAAG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* * * *
189 CTGATGCC-AGTGCCAAGTGGACAT---CAAATT
1 CCGACGCCAAG-GCC-A-TGGGCATCGGCAAATG
* * * * *
219 CCAACG-CAATCGGCAAAT-GCCGTC-GC-CAT-
1 CCGACGCCAA--GGC-CATGGGCATCGGCAAATG
* * *** **
248 --G--GCCATGTGCCATCGGCAAATGCCGATG
1 CCGACGCCAAG-GCCATGGGCATCGGCAAATG
* * * * * * *** *
276 CCAACG---TGACAACGGACATCATAAAATT
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
*
304 CCGA--C-AAGGCCA----C--CGGTAAATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* *
326 CCGACGCCAAGGCCATGGACATCGGCAGATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* *
357 CC-ATCGCCAAGACCAAGGGCCATCGGCAAATG
1 CCGA-CGCCAAGGCCATGGG-CATCGGCAAATG
* * *
389 CCGACGCCAAGACCAAGGGCCATCGGCAAATT
1 CCGACGCCAAGGCCATGGG-CATCGGCAAATG
* * *
421 CCGACGCTAAGCCCAAGGGCATCGGCAAATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* * *
452 CGGACGCCAAGGCCAAAGGCCATCGGCAAATG
1 CCGACGCCAAGGCC-ATGGGCATCGGCAAATG
* * * * *
484 CCGACACCAAGGACAAGGGTACA-AGGCACAT-
1 CCGACGCCAAGGCCATGGG--CATCGGCAAATG
* * ** ** *
515 -C-A-TCAAATTCC--GACACAATCAGCAAATG
1 CCGACGCCAAGGCCATG-GGC-ATCGGCAAATG
* * * *
543 CCGATGCTAAAGCAACA-GGCCATCGGCAAATG
1 CCGACGCCAAGGC--CATGGGCATCGGCAAATG
*
575 CCGATGCCAAGGCCATGGGCCATCGGCAAATG
1 CCGACGCCAAGGCCATGGG-CATCGGCAAATG
*
607 CCGATGCCAAGGCCATGGGCCATCGGCAAATG
1 CCGACGCCAAGGCCATGGG-CATCGGCAAATG
*
639 CCGACGCCTAGGCCATGGGCATCGGCAAATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* * * *
670 CCAACGCCAAAGACATGGACATCGGCAAATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
* * * * *
701 CCAACGCCAGGGCAAAGGGCATCGGCGAATG
1 CCGACGCCAAGGCCATGGGCATCGGCAAATG
** *
732 CCGACAACAAGGCCATTGGCATCGGCAAA
1 CCGACGCCAAGGCCATGGGCATCGGCAAA
761 AGCTGATGCC
Statistics
Matches: 556, Mismatches: 124, Indels: 97
0.72 0.16 0.12
Matches are distributed among these distances:
22 9 0.02
24 5 0.01
25 13 0.02
26 6 0.01
27 7 0.01
28 17 0.03
29 9 0.02
30 18 0.03
31 239 0.43
32 222 0.40
33 10 0.02
34 1 0.00
ACGTcount: A:0.30, C:0.31, G:0.28, T:0.11
Consensus pattern (31 bp):
CCGACGCCAAGGCCATGGGCATCGGCAAATG
Found at i:390 original size:32 final size:32
Alignment explanation
Indices: 311--502 Score: 228
Period size: 32 Copynumber: 6.1 Consensus size: 32
301 ATTCCGACAA
* * *
311 GGCCACCGGTAAATGCCGACGCCAAGGCC-AT
1 GGCCATCGGCAAATGCCGACGCCAAGGCCAAG
* * *
342 GGACATCGGCAGATGCC-ATCGCCAAGACCAAG
1 GGCCATCGGCAAATGCCGA-CGCCAAGGCCAAG
*
374 GGCCATCGGCAAATGCCGACGCCAAGACCAAG
1 GGCCATCGGCAAATGCCGACGCCAAGGCCAAG
* * *
406 GGCCATCGGCAAATTCCGACGCTAAGCCCAAG
1 GGCCATCGGCAAATGCCGACGCCAAGGCCAAG
* *
438 GG-CATCGGCAAATGCGGACGCCAAGGCCAAA
1 GGCCATCGGCAAATGCCGACGCCAAGGCCAAG
* *
469 GGCCATCGGCAAATGCCGACACCAAGGACAAG
1 GGCCATCGGCAAATGCCGACGCCAAGGCCAAG
501 GG
1 GG
503 TACAAGGCAC
Statistics
Matches: 137, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
30 1 0.01
31 48 0.35
32 87 0.64
33 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.29, T:0.08
Consensus pattern (32 bp):
GGCCATCGGCAAATGCCGACGCCAAGGCCAAG
Found at i:444 original size:95 final size:95
Alignment explanation
Indices: 306--502 Score: 247
Period size: 95 Copynumber: 2.1 Consensus size: 95
296 ATAAAATTCC
* * * *
306 GACAA-GGCCACCGGTAAATGCCGACGCCAAGGCCATGGACATCGGCAGATGC-CATCGCCAAGA
1 GACAAGGGCCACCGGCAAATGCCGACGCCAAGCCCAAGGACATCGGCAAATGCGCA-CGCCAAGA
* *
369 CCAAGGGCCATCGGCAAATGCCGACGCCAA-
65 CCAAAGGCCATCGGCAAATGCCGACACCAAG
* * * * * *
399 GACCAAGGGCCATCGGCAAATTCCGACGCTAAGCCCAAGGGCATCGGCAAATGCGGACGCCAAGG
1 GA-CAAGGGCCACCGGCAAATGCCGACGCCAAGCCCAAGGACATCGGCAAATGCGCACGCCAAGA
464 CCAAAGGCCATCGGCAAATGCCGACACCAAG
65 CCAAAGGCCATCGGCAAATGCCGACACCAAG
495 GACAAGGG
1 GACAAGGG
503 TACAAGGCAC
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
93 2 0.02
94 3 0.03
95 80 0.91
96 3 0.03
ACGTcount: A:0.31, C:0.32, G:0.29, T:0.08
Consensus pattern (95 bp):
GACAAGGGCCACCGGCAAATGCCGACGCCAAGCCCAAGGACATCGGCAAATGCGCACGCCAAGAC
CAAAGGCCATCGGCAAATGCCGACACCAAG
Found at i:587 original size:25 final size:27
Alignment explanation
Indices: 555--642 Score: 86
Period size: 32 Copynumber: 2.9 Consensus size: 27
545 GATGCTAAAG
555 CAACAGGCCATCGGCAAATGCCGATGC
1 CAACAGGCCATCGGCAAATGCCGATGC
582 CAAGGCCATGGGCCATCGGCAAATGCCGATGC
1 CAA---CA--GGCCATCGGCAAATGCCGATGC
614 CAAGGCCATGGGCCATCGGCAAATGCCGA
1 CAA---CA--GGCCATCGGCAAATGCCGA
643 CGCCTAGGCC
Statistics
Matches: 56, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
27 3 0.05
30 2 0.04
32 51 0.91
ACGTcount: A:0.27, C:0.32, G:0.30, T:0.11
Consensus pattern (27 bp):
CAACAGGCCATCGGCAAATGCCGATGC
Found at i:949 original size:246 final size:244
Alignment explanation
Indices: 658--1168 Score: 797
Period size: 246 Copynumber: 2.1 Consensus size: 244
648 AGGCCATGGG
* * * *
658 CATCGGCAAATGCCAACGCCAAAGACATGGACATCGGCAAATGCCAACGCCAGGGCAAAGGGCAT
1 CATCGGTAAATGCCGACGCCAAAGACATGGACATCGACAAATGCCAACGCCAAGGCAAAGGGCAT
* *
723 CGGCGAATGCCGACAACAAGGCCATTGGCATCGGCAAAAGCTGATGCCAGTGCCAAGCGGACAAG
66 CGGCAAATGCCGACAACAAGGCCATTGGCATCGGCAAAAGCCGATGCCAGTGCCAAGCGGACAAG
* **
788 GGACATCATCAAATTCCGACGCAATAGGCAAATGCCGACGCCATTGCAATGTGCCATCGGCAAAT
131 GGACATCATCAAATTCCAACGCAATAGGCAAATGCCGA-GCCAAGGCAATGTGCCATCGGCAAAT
*
853 GCCGATGCCAATTCCAACGTGACAAGGGACATCATAAAATTCCGACAAGGC
195 GCCGATGCCAATGCCAACGTGAC-AGGGACATCATAAAATTCCGACAAGGC
* *
904 CATCGGTAAATGCCGACGCCAAGGACATGGACATCGACAAATGCCAACGCCAAGGCCAAGGGCAT
1 CATCGGTAAATGCCGACGCCAAAGACATGGACATCGACAAATGCCAACGCCAAGGCAAAGGGCAT
* ** * **
969 CGGCAAATGCTGACGCCAAGGCCATTGGCTTCGGCAAAAGCCGATGCCAGTGCCAATTGGACAAG
66 CGGCAAATGCCGACAACAAGGCCATTGGCATCGGCAAAAGCCGATGCCAGTGCCAAGCGGACAAG
* **
1034 GGACATCATCAAATTCCAACGCAATCGGCAAATGCCGAGCCAAGGCCTTGTGCCATCGGCAAATG
131 GGACATCATCAAATTCCAACGCAATAGGCAAATGCCGAGCCAAGGCAATGTGCCATCGGCAAATG
*
1099 CCGATGCCAATGCCAACGTGACAGGGACATCATAAAGTTCCGACAAGGC
196 CCGATGCCAATGCCAACGTGACAGGGACATCATAAAATTCCGACAAGGC
*
1148 CATCGGTAAATTCCGACGCCA
1 CATCGGTAAATGCCGACGCCA
1169 CATCGGGACT
Statistics
Matches: 242, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
244 46 0.19
245 44 0.18
246 152 0.63
ACGTcount: A:0.32, C:0.29, G:0.25, T:0.14
Consensus pattern (244 bp):
CATCGGTAAATGCCGACGCCAAAGACATGGACATCGACAAATGCCAACGCCAAGGCAAAGGGCAT
CGGCAAATGCCGACAACAAGGCCATTGGCATCGGCAAAAGCCGATGCCAGTGCCAAGCGGACAAG
GGACATCATCAAATTCCAACGCAATAGGCAAATGCCGAGCCAAGGCAATGTGCCATCGGCAAATG
CCGATGCCAATGCCAACGTGACAGGGACATCATAAAATTCCGACAAGGC
Found at i:990 original size:31 final size:31
Alignment explanation
Indices: 898--1017 Score: 123
Period size: 31 Copynumber: 3.9 Consensus size: 31
888 AAAATTCCGA
* * *
898 CAAGGCCATCGGTAAATGCCGACGCCAAGGA
1 CAAGGGCATCGGCAAATGCCGACGCCAAGGC
* * * *
929 CATGGACATCGACAAATGCCAACGCCAAGGC
1 CAAGGGCATCGGCAAATGCCGACGCCAAGGC
*
960 CAAGGGCATCGGCAAATGCTGACGCCAAGGC
1 CAAGGGCATCGGCAAATGCCGACGCCAAGGC
** * * *
991 CATTGGCTTCGGCAAAAGCCGATGCCA
1 CAAGGGCATCGGCAAATGCCGACGCCA
1018 GTGCCAATTG
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.31, C:0.30, G:0.28, T:0.12
Consensus pattern (31 bp):
CAAGGGCATCGGCAAATGCCGACGCCAAGGC
Found at i:1093 original size:90 final size:89
Alignment explanation
Indices: 967--1139 Score: 228
Period size: 90 Copynumber: 1.9 Consensus size: 89
957 GGCCAAGGGC
* * * *
967 ATCGGCAAATGCTGACGCCAAGGCCATTGGCTTCGGCAAAAGCCGATGCCAGTGCCAA-TTGGAC
1 ATCGGCAAATGCCGACGCCAAGGCCATTGGCATCGGCAAAAGCCGATGCCAATGCCAACGT-GAC
1031 AAGGGACATCATCAAA-TTCCAACGCA
65 -AGGGACATCAT-AAAGTTCCAACGCA
*
1057 ATCGGCAAATGCCGA-GCCAAGGCC-TTGTGCCATCGGCAAATGCCGATGCCAATGCCAACGTGA
1 ATCGGCAAATGCCGACGCCAAGGCCATTG-G-CATCGGCAAAAGCCGATGCCAATGCCAACGTGA
1120 CAGGGACATCATAAAGTTCC
64 CAGGGACATCATAAAGTTCC
1140 GACAAGGCCA
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
88 6 0.08
89 25 0.34
90 42 0.57
91 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17
Consensus pattern (89 bp):
ATCGGCAAATGCCGACGCCAAGGCCATTGGCATCGGCAAAAGCCGATGCCAATGCCAACGTGACA
GGGACATCATAAAGTTCCAACGCA
Found at i:2146 original size:64 final size:63
Alignment explanation
Indices: 1793--2312 Score: 370
Period size: 62 Copynumber: 8.3 Consensus size: 63
1783 TTCCGACGCA
* * * * * * *
1793 ATCGGCAAATGCCGATACCAAGTCAACGGGCCATCTGCAAATGCCGACGCCAAGG-CCGAGGGCC
1 ATCGGCAAATGCCGATGCCAAGGCCATGGG-CATCGGCAAATGCCAACGCCAAGGACC-ATGGCC
* * * * * * * *
1857 ATCGGCAAATGCGGACGCCTAGGCCATGGGCATCGGGAAATGCCGACGCCAAGG-CAAAGGGC
1 ATCGGCAAATGCCGATGCCAAGGCCATGGGCATCGGCAAATGCCAACGCCAAGGACCATGGCC
* * * *
1919 ATCGGCAAATGCCGACGCCAAGGCCATGGGCATCGTCAAATGCCGACGCCAA-GACCAAGGGCC
1 ATCGGCAAATGCCGATGCCAAGGCCATGGGCATCGGCAAATGCCAACGCCAAGGACC-ATGGCC
* * * * * * * * *** *
1982 ATCGGCAAATTCCGACGCCAAGGACAAGGGTACA-AGGC-ACT-TC-A--TCAAATTCCGA-CGC
1 ATCGGCAAATGCCGATGCCAAGGCCATGGG--CATCGGCAAATGCCAACGCCAAGGACC-ATGGC
*
2040 A
63 C
* * * * *
2041 ATCAGCAAATGCCGATGCCAAGGCAACA-GGCCATCAGCAAATACCAATGCCAAGGAACCA-GGC
1 ATCGGCAAATGCCGATGCCAAGGC--CATGGGCATCGGCAAATGCCAACGCCAAGG-ACCATGGC
2104 C
63 C
* * *
2105 ATCGGCAAATGCCGATGCCAAGGCCATGGGCCACCGGCAAATGCCGACGCCAA-GAGCATGGGCC
1 ATCGGCAAATGCCGATGCCAAGGCCATGGG-CATCGGCAAATGCCAACGCCAAGGACCAT-GGCC
* * *
2169 ATCGGCAAATGCCGACGCCTAGGCCATGGGCATCGGCAAATGCCAACGCCAAGG-CCATGGAC
1 ATCGGCAAATGCCGATGCCAAGGCCATGGGCATCGGCAAATGCCAACGCCAAGGACCATGGCC
* * * * *
2231 ATCGGCAAATGCCAAAGCCAAGGCCAAGGGCATCGGCAAATGCCGACGCCAAGG-CCATTGG-A
1 ATCGGCAAATGCCGATGCCAAGGCCATGGGCATCGGCAAATGCCAACGCCAAGGACCA-TGGCC
* *
2293 ATCGGCAAAAGCTGATGCCA
1 ATCGGCAAATGCCGATGCCA
2313 GTGCCAAGTG
Statistics
Matches: 365, Mismatches: 71, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
58 2 0.01
59 27 0.07
60 7 0.02
61 5 0.01
62 131 0.36
63 85 0.23
64 104 0.28
65 4 0.01
ACGTcount: A:0.30, C:0.31, G:0.28, T:0.11
Consensus pattern (63 bp):
ATCGGCAAATGCCGATGCCAAGGCCATGGGCATCGGCAAATGCCAACGCCAAGGACCATGGCC
Found at i:2206 original size:31 final size:31
Alignment explanation
Indices: 1793--2301 Score: 334
Period size: 31 Copynumber: 16.3 Consensus size: 31
1783 TTCCGACGCA
** * * *
1793 ATCGGCAAATGCCGATACCAAGTCAACGGGCC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGG-C
*
1825 ATCTGCAAATGCCGACGCCAAGGCCGA-GGGCC
1 ATCGGCAAATGCCGACGCCAAGGCC-ATGGG-C
* *
1857 ATCGGCAAATGCGGACGCCTAGGCCATGGGC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
* * *
1888 ATCGGGAAATGCCGACGCCAAGGCAAAGGGC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
1919 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
* * *
1950 ATCGTCAAATGCCGACGCCAAGACCAAGGGCC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGG-C
* * *
1982 ATCGGCAAATTCCGACGCCAAGGACAAGGGTAC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGG--C
* * ** ** * * * **
2015 A-AGGCACTTCAT-CAAATTCCGACGCAATCAGC
1 ATCGGCA---AATGCCGACGCCAAGGCCATGGGC
*** ** * * * **
2047 AAATGCCGATGCCAAGGCAACAGGCCATCAGC
1 ATCGGCAAATGCCGACGCCA-AGGCCATGGGC
**** * * * *
2079 AAATACCAATGCC-AAG-GAA--CCA-GGCC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
*
2105 ATCGGCAAATGCCGATGCCAAGGCCATGGGCC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGG-C
*
2137 ACCGGCAAATGCCGACGCCAAGAG-CATGGGCC
1 ATCGGCAAATGCCGACGCCAAG-GCCATGGG-C
*
2169 ATCGGCAAATGCCGACGCCTAGGCCATGGGC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
* *
2200 ATCGGCAAATGCCAACGCCAAGGCCATGGAC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
* * *
2231 ATCGGCAAATGCCAAAGCCAAGGCCAAGGGC
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
* *
2262 ATCGGCAAATGCCGACGCCAAGGCCATTGGA
1 ATCGGCAAATGCCGACGCCAAGGCCATGGGC
2293 ATCGGCAAA
1 ATCGGCAAA
2302 AGCTGATGCC
Statistics
Matches: 382, Mismatches: 77, Indels: 37
0.77 0.16 0.07
Matches are distributed among these distances:
26 9 0.02
27 5 0.01
28 2 0.01
29 1 0.00
30 6 0.02
31 184 0.48
32 158 0.41
33 7 0.02
34 8 0.02
35 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.28, T:0.11
Consensus pattern (31 bp):
ATCGGCAAATGCCGACGCCAAGGCCATGGGC
Found at i:2466 original size:94 final size:93
Alignment explanation
Indices: 2255--2491 Score: 306
Period size: 94 Copynumber: 2.6 Consensus size: 93
2245 AAGCCAAGGC
* ** * *
2255 CAAGGGCATCGGCAAATGCCGACGCCAAGGCCAT-TGGAATCGGCAAAAGCTGATGCCAGTGCCA
1 CAAGGCCATCGGCAAATGCCGACGCCAAGGCCATGTGCCATCGGCAAAAGCCGATGCCAATGCCA
*
2319 AGTGGACAAGGAGATCATCAAATTCCGA
66 AGTGGACAAGGACATCATCAAATTCCGA
* * *
2347 C---GCAATCGGCAAATGCCGACGCCAAGGCCATGTGCCATCGGCAAATGCCGATGCCAATTCCA
1 CAAGGCCATCGGCAAATGCCGACGCCAAGGCCATGTGCCATCGGCAAAAGCCGATGCCAATGCCA
2409 ACGTGAGA-AAGGACATCA-CTAAATTCCGA
66 A-GTG-GACAAGGACATCATC-AAATTCCGA
* *
2438 CAAGGCCATCGGTAAATGCCGACGCCAAGGCCATGGGCCATCGGCAAAAGCCGA
1 CAAGGCCATCGGCAAATGCCGACGCCAAGGCCATGTGCCATCGGCAAAAGCCGA
2492 CACCACATCG
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
89 28 0.22
90 26 0.21
91 22 0.18
92 3 0.02
94 46 0.37
ACGTcount: A:0.32, C:0.28, G:0.27, T:0.14
Consensus pattern (93 bp):
CAAGGCCATCGGCAAATGCCGACGCCAAGGCCATGTGCCATCGGCAAAAGCCGATGCCAATGCCA
AGTGGACAAGGACATCATCAAATTCCGA
Found at i:2769 original size:32 final size:32
Alignment explanation
Indices: 2725--3321 Score: 608
Period size: 32 Copynumber: 19.2 Consensus size: 32
2715 GAGCTCGGCA
*
2725 CCAAGGGACATCGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
*
2757 CCAAGGGCCATCGGCAAATGCCGACACCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
2789 CCAAGGGCCATCGGCAAACGCCGACGCCTAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
2821 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * *
2853 CC-AGTGGTCATCAGCAAATGCCGACACCAAGG
1 CCAAG-GGCCATCGGCAAATGCCGACGCCAAGG
*
2885 CCATGGGCCATCGGCAAATGCCGA---C---G
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
*
2911 CCAA-GGCCATGGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * *
2942 CCATGGG-CATCCGAAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
2973 CC-AGGGCCATCGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * * * * * **
3004 CCGAGGGGACA-AGGGACAT--C-A-TCAAATT
1 CC-AAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * * **
3032 CCAA-CGCAATCGGCAAATCCCAATACCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
3063 -CAACGGGCCATCGGCAAATGCCGACGACTAGG
1 CCAA-GGGCCATCGGCAAATGCCGACGCCAAGG
*
3095 CCATGGG-CATCGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * *
3126 TCAAGGGACATCGGCAAATGCCCACACCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
3158 CCATGGG-CATCGTCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
*
3189 CCAAGGGCCATCGGCAAATGCCGACGTCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * *
3221 CCATGGG-CATCGGCAACTACCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
3252 CCAAGGG-CAT-GGACAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGG-CAAATGCCGACGCCAAGG
* * * *
3283 CCTAGGGCCATCGACAAATGCCGATGCCAATG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
3315 CCAAGGG
1 CCAAGGG
3322 GACAAGGGAC
Statistics
Matches: 463, Mismatches: 77, Indels: 50
0.78 0.13 0.08
Matches are distributed among these distances:
25 18 0.04
26 6 0.01
27 6 0.01
28 6 0.01
29 3 0.01
30 10 0.02
31 162 0.35
32 243 0.52
33 9 0.02
ACGTcount: A:0.29, C:0.32, G:0.29, T:0.09
Consensus pattern (32 bp):
CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
Found at i:2919 original size:25 final size:25
Alignment explanation
Indices: 2890--3005 Score: 106
Period size: 25 Copynumber: 4.2 Consensus size: 25
2880 CAAGGCCATG
2890 GGCCATCGGCAAATGCCGACGCCAA
1 GGCCATCGGCAAATGCCGACGCCAA
*
2915 GGCCATGGGCAAATGCCGACGCCAA
1 GGCCATCGGCAAATGCCGACGCCAA
*
2940 GGCCATGGGCATCCGAAAATGCCGACGCCAAGGCCA
1 GGCCATCGG----C--AAATGCCGACGCC-A----A
2976 GGGCCATCGGCAAATGCCGACGCCAA
1 -GGCCATCGGCAAATGCCGACGCCAA
3002 GGCC
1 GGCC
3006 GAGGGGACAA
Statistics
Matches: 77, Mismatches: 2, Indels: 24
0.75 0.02 0.23
Matches are distributed among these distances:
25 37 0.48
26 1 0.01
29 1 0.01
30 1 0.01
31 26 0.34
32 1 0.01
33 1 0.01
36 1 0.01
37 8 0.10
ACGTcount: A:0.27, C:0.34, G:0.31, T:0.08
Consensus pattern (25 bp):
GGCCATCGGCAAATGCCGACGCCAA
Found at i:3139 original size:63 final size:63
Alignment explanation
Indices: 2733--3321 Score: 581
Period size: 63 Copynumber: 9.5 Consensus size: 63
2723 CACCAAGGGA
*
2733 CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGAC-ACCAAGGCCAAGGG
1 CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGA-CAAGGCCATGGG
* * * *
2796 CCATCGGCAAACGCCGACGCCTAGGCCAAGGGCCATCGGCAAATGCCGACGCCAAGGCCAGTGGT
1 -CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGACAAGGCCA-TGGG
* * * *
2861 CATCAGCAAATGCCGACACCAAGGCCATGGGCCATCGGCAAATGCCGACGCCAAGGCCAT--G
1 CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGACAAGGCCATGGG
* * * *
2922 ----GGCAAATGCCGACGCCAAGGCCATGGG-CATCCGAAAATGCCGACGCCAAGGCCA-GGG
1 CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGACAAGGCCATGGG
* * * * * ** **
2979 CCATCGGCAAATGCCGACGCCAAGGCCGAGGGGACA-AGGGACAT--C-ATC-A-AATTCCA-AC
1 -CATCGGCAAATGCCGACGCCAAGGCC-AAGGGCCATCGGCAAATGCCGA-CGACAAGGCCATGG
3037 G
63 G
* * ** *
3038 CAATCGGCAAATCCCAATACCAAGG-CAACGGGCCATCGGCAAATGCCGACGACTAGGCCATGGG
1 C-ATCGGCAAATGCCGACGCCAAGGCCAA-GGGCCATCGGCAAATGCCGACGACAAGGCCATGGG
* * *
3102 CATCGGCAAATGCCGACGCCAAGGTCAAGGGACATCGGCAAATGCCCAC-ACCAAGGCCATGGG
1 CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGA-CAAGGCCATGGG
* *
3165 CATCGTCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGTCAAGGCCATGGG
1 CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGACAAGGCCATGGG
* * *
3228 CATCGGCAACTACCGACGCCAAGGCCAAGGG-CAT-GGACAAATGCCGACGCCAAGGCC-TAGGG
1 CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGG-CAAATGCCGACGACAAGGCCAT-GGG
* * *
3290 CCATCGACAAATGCCGATGCCAATGCCAAGGG
1 -CATCGGCAAATGCCGACGCCAAGGCCAAGGG
3322 GACAAGGGAC
Statistics
Matches: 438, Mismatches: 60, Indels: 55
0.79 0.11 0.10
Matches are distributed among these distances:
56 25 0.06
57 27 0.06
58 7 0.02
59 30 0.07
60 1 0.00
61 7 0.02
62 50 0.11
63 173 0.39
64 116 0.26
65 2 0.00
ACGTcount: A:0.29, C:0.32, G:0.29, T:0.09
Consensus pattern (63 bp):
CATCGGCAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGACAAGGCCATGGG
Found at i:3423 original size:32 final size:32
Alignment explanation
Indices: 3355--3488 Score: 128
Period size: 32 Copynumber: 4.2 Consensus size: 32
3345 GACGCAATCT
* * * * * *
3355 GCAAATGGCGATGCCAAGGCAACGGACTATCA
1 GCAAATGACGACGCCAAGGCCATGGACCATCG
* *
3387 GCAAATGACAACGCCAAGGCCATGGACCACCG
1 GCAAATGACGACGCCAAGGCCATGGACCATCG
*
3419 GCAAAT-ACCGACGCCAAGGCCATGGA-CATTG
1 GCAAATGA-CGACGCCAAGGCCATGGACCATCG
* ** *
3450 GCAAATGCCGATTCCAAGGCCATGGGCCATCG
1 GCAAATGACGACGCCAAGGCCATGGACCATCG
3482 GCAAATG
1 GCAAATG
3489 CTGATGCTAG
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
31 25 0.30
32 58 0.70
ACGTcount: A:0.32, C:0.29, G:0.27, T:0.12
Consensus pattern (32 bp):
GCAAATGACGACGCCAAGGCCATGGACCATCG
Found at i:3459 original size:186 final size:185
Alignment explanation
Indices: 3171--3552 Score: 500
Period size: 186 Copynumber: 2.1 Consensus size: 185
3161 TGGGCATCGT
* * * * * * *
3171 CAAATGCCGACGCCAAGGCCAAGGGCCATCGGCAAATGCCGACGTCAAGGCCATGGGCATCGGCA
1 CAAATGCCGACGCCAAGGCCAAGGACCATCAGCAAATGACAACGCCAAGGCCATGGCCACCGGCA
* *
3236 ACTACCGACGCCAAGGCCAAGGGCATGGACAAATGCCGACGCCAAGGCC-TAGGGCCATCGACAA
66 AATACCGACGCCAAGGCCAAGGACATGGACAAATGCCGACGCCAAGGCCAT-GGGCCATCGACAA
* *
3300 ATGCCGATGCCAATGCCAAGGGGACAAGGGACATCATAAAATTCCGACGCAATCTG
130 ATGCCGATGCCAATGCCAAGGGGACAAGGGACATCATAAAATTCCAACGCAATCAG
* * *
3356 CAAATGGCGATGCCAAGG-CAACGGACTATCAGCAAATGACAACGCCAAGGCCATGGACCACCGG
1 CAAATGCCGACGCCAAGGCCAA-GGACCATCAGCAAATGACAACGCCAAGGCCATGG-CCACCGG
* ** *
3420 CAAATACCGACGCCAAGGCCATGGACATTGG-CAAATGCCGATTCCAAGGCCATGGGCCATCGGC
64 CAAATACCGACGCCAAGGCCAAGGACA-TGGACAAATGCCGACGCCAAGGCCATGGGCCATCGAC
* * * * *
3484 AAATGCTGATGCTAGTGCCAAGTGGACAAGGGACATCATCAAATTCCAACGCAATCAG
128 AAATGCCGATGCCAATGCCAAGGGGACAAGGGACATCATAAAATTCCAACGCAATCAG
3542 CAAATGCCGAC
1 CAAATGCCGAC
3553 ACCTAGGCTA
Statistics
Matches: 168, Mismatches: 25, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
184 3 0.02
185 44 0.26
186 117 0.70
187 4 0.02
ACGTcount: A:0.32, C:0.29, G:0.26, T:0.12
Consensus pattern (185 bp):
CAAATGCCGACGCCAAGGCCAAGGACCATCAGCAAATGACAACGCCAAGGCCATGGCCACCGGCA
AATACCGACGCCAAGGCCAAGGACATGGACAAATGCCGACGCCAAGGCCATGGGCCATCGACAAA
TGCCGATGCCAATGCCAAGGGGACAAGGGACATCATAAAATTCCAACGCAATCAG
Found at i:3605 original size:91 final size:93
Alignment explanation
Indices: 3450--3677 Score: 282
Period size: 91 Copynumber: 2.5 Consensus size: 93
3440 ATGGACATTG
** * * * * *
3450 GCAAATGCCGATTCCAAGGCCATGGGCCATCGGCAAATGCTGATGCTAGTGCCAAGTGGACAAGG
1 GCAAATGCCGACACCAAGGCCACGGGCCATCGGCAAATGCCGATGCCAATGCCAAGTGCACAAGG
3515 GACATCATCAAATT-C-CAACGCAATCA
66 GACATCATCAAATTCCACAACGCAATCA
* * * *
3541 GCAAATGCCGACACCTAGGCTACGTGCCATCGTCAAATGCCGATGCCAATGCCAACGT-CACAAG
1 GCAAATGCCGACACCAAGGCCACGGGCCATCGGCAAATGCCGATGCCAATGCCAA-GTGCACAAG
* * *
3605 GGACATCATCAAATTCCGACAAGGCCATCG
65 GGACATCATCAAATTCC-ACAACGCAATCA
*
3635 GCAAATGCCGACACCAAGGCCATGGGCCATCGGCAAATGCCGA
1 GCAAATGCCGACACCAAGGCCACGGGCCATCGGCAAATGCCGA
3678 CACCACATCG
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
91 65 0.57
92 3 0.03
94 46 0.40
ACGTcount: A:0.31, C:0.30, G:0.24, T:0.15
Consensus pattern (93 bp):
GCAAATGCCGACACCAAGGCCACGGGCCATCGGCAAATGCCGATGCCAATGCCAAGTGCACAAGG
GACATCATCAAATTCCACAACGCAATCA
Found at i:4317 original size:32 final size:32
Alignment explanation
Indices: 4273--4810 Score: 539
Period size: 31 Copynumber: 17.2 Consensus size: 32
4263 CACGTCGGCA
* *
4273 CCAAGGGACATCGGCAAATGCCGACGACAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
*
4305 ACAAGGGCCATCGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * *
4337 CCAGGGGTCATCGGCAAATGCCGACACCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
4369 CCATGGGCCATCGGCATATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
4401 CCATGGG-CATCGGCAAATGCCGACGCCAAGA
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * *
4432 TCATGGG-CATCCGTAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
4463 CC-AGGGCCATCGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * * * * * **
4494 CCGAGGGGACA-AGGGACAT--C-A-TCAAATT
1 CC-AAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * **
4522 CCAA-CGCAATCGGCAAATCCCGATACCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
4553 -CAACGGGCCATCGGCAAATGCCGACGACTAGG
1 CCAA-GGGCCATCGGCAAATGCCGACGCCAAGG
*
4585 CCATGGG-CATCGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * *
4616 TCAAGGGCCATCGGCAAATGCCAACACCAAAG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
4648 CCATGGGCCATCGGCAAATGCCG-TGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* *
4679 CCATGGG-CATCGGTAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
*
4710 CCAAGGG-CATGGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
*
4741 CCAAGGG-CATGGGCAAATGCCGACGCCAAGG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
* * * *
4772 CCTAGGGCCATCGACAAATGCCGATGCCAATG
1 CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
*
4804 CGAAGGG
1 CCAAGGG
4811 GACAAGGGAC
Statistics
Matches: 418, Mismatches: 74, Indels: 28
0.80 0.14 0.05
Matches are distributed among these distances:
26 2 0.00
27 6 0.01
28 5 0.01
29 2 0.00
30 22 0.05
31 188 0.45
32 186 0.44
33 7 0.02
ACGTcount: A:0.29, C:0.31, G:0.30, T:0.10
Consensus pattern (32 bp):
CCAAGGGCCATCGGCAAATGCCGACGCCAAGG
Found at i:4595 original size:184 final size:185
Alignment explanation
Indices: 4346--4680 Score: 512
Period size: 184 Copynumber: 1.8 Consensus size: 185
4336 GCCAGGGGTC
* * * * *
4346 ATCGGCAAATGCCGACACCAAGGCCATGGGCCATCGGCATATGCCGACGCCAAGGCCATGGGCAT
1 ATCGGCAAATCCCGACACCAAGGCAACGGGCCATCGGCAAATGCCGACGACAAGGCCATGGGCAT
* * * * *
4411 CGGCAAATGCCGACGCCAAGATCATGGG-CATCCGTAAATGCCGACGCCAAGGCCA-GGGCCATC
66 CGGCAAATGCCGACGCCAAGATCAAGGGCCATCCGCAAATGCCAACACCAAAGCCATGGGCCATC
4474 GGCAAATGCCGACGCCAAGGCCGAGGGGACAAGGGACATCATCAAATTCCAACGCA
131 GGCAAATGCCG-CGCCAAGGCCGAGGGGACAAGGGACATCATCAAATTCCAACGCA
* *
4530 ATCGGCAAATCCCGATACCAAGGCAACGGGCCATCGGCAAATGCCGACGACTAGGCCATGGGCAT
1 ATCGGCAAATCCCGACACCAAGGCAACGGGCCATCGGCAAATGCCGACGACAAGGCCATGGGCAT
* *
4595 CGGCAAATGCCGACGCCAAGGTCAAGGGCCATCGGCAAATGCCAACACCAAAGCCATGGGCCATC
66 CGGCAAATGCCGACGCCAAGATCAAGGGCCATCCGCAAATGCCAACACCAAAGCCATGGGCCATC
*
4660 GGCAAATGCCGTGCCAAGGCC
131 GGCAAATGCCGCGCCAAGGCC
4681 ATGGGCATCG
Statistics
Matches: 134, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
184 84 0.63
185 31 0.23
186 19 0.14
ACGTcount: A:0.29, C:0.32, G:0.28, T:0.11
Consensus pattern (185 bp):
ATCGGCAAATCCCGACACCAAGGCAACGGGCCATCGGCAAATGCCGACGACAAGGCCATGGGCAT
CGGCAAATGCCGACGCCAAGATCAAGGGCCATCCGCAAATGCCAACACCAAAGCCATGGGCCATC
GGCAAATGCCGCGCCAAGGCCGAGGGGACAAGGGACATCATCAAATTCCAACGCA
Found at i:4629 original size:63 final size:63
Alignment explanation
Indices: 4281--4810 Score: 451
Period size: 63 Copynumber: 8.5 Consensus size: 63
4271 CACCAAGGGA
* * * * * *
4281 CATCGGCAAATGCCGACGACAAGGACAAGGGCCATCGGCAAATGCCGACGCCAAGGCCAGGGGT
1 CATCGGCAAATGCCGATGCCAAGGCCAAGGG-CATCGGCAAATGCCGACGACAAGGCCATGGGC
** * * *
4345 CATCGGCAAATGCCGACACCAAGGCCATGGGCCATCGGCATATGCCGACGCCAAGGCCATGGG-
1 CATCGGCAAATGCCGATGCCAAGGCCAAGGG-CATCGGCAAATGCCGACGACAAGGCCATGGGC
* ** * * * *
4408 CATCGGCAAATGCCGACGCCAAGATCATGGGCATCCGTAAATGCCGACGCCAAGGCCA-GGGC
1 CATCGGCAAATGCCGATGCCAAGGCCAAGGGCATCGGCAAATGCCGACGACAAGGCCATGGGC
* * * * * ** **
4470 CATCGGCAAATGCCGACGCCAAGGCCGAGGGGACA-AGGGACAT--C-ATC-A-AATTCCA-ACG
1 CATCGGCAAATGCCGATGCCAAGGCC-AAGGG-CATCGGCAAATGCCGA-CGACAAGGCCATGGG
4528 C
63 C
* * * *
4529 AATCGGCAAATCCCGATACCAAGG-CAACGGGCCATCGGCAAATGCCGACGACTAGGCCATGGG-
1 CATCGGCAAATGCCGATGCCAAGGCCAA-GGG-CATCGGCAAATGCCGACGACAAGGCCATGGGC
* * * *
4592 CATCGGCAAATGCCGACGCCAAGGTCAAGGGCCATCGGCAAATGCCAAC-ACCAAAGCCATGGGC
1 CATCGGCAAATGCCGATGCCAAGGCCAAGGG-CATCGGCAAATGCCGACGA-CAAGGCCATGGGC
* * * *
4656 CATCGGCAAATGCCG-TGCCAAGGCCATGGGCATCGGTAAATGCCGACGCCAAGGCCAAGGG-
1 CATCGGCAAATGCCGATGCCAAGGCCAAGGGCATCGGCAAATGCCGACGACAAGGCCATGGGC
* * * *
4717 CATGGGCAAATGCCGACGCCAAGGCCAAGGGCATGGGCAAATGCCGACGCCAAGGCC-TAGGGC
1 CATCGGCAAATGCCGATGCCAAGGCCAAGGGCATCGGCAAATGCCGACGACAAGGCCAT-GGGC
* * *
4780 CATCGACAAATGCCGATGCCAATGCGAAGGG
1 CATCGGCAAATGCCGATGCCAAGGCCAAGGG
4811 GACAAGGGAC
Statistics
Matches: 383, Mismatches: 64, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
57 1 0.00
58 6 0.02
59 32 0.08
60 1 0.00
61 21 0.05
62 116 0.30
63 128 0.33
64 78 0.20
ACGTcount: A:0.29, C:0.31, G:0.30, T:0.10
Consensus pattern (63 bp):
CATCGGCAAATGCCGATGCCAAGGCCAAGGGCATCGGCAAATGCCGACGACAAGGCCATGGGC
Found at i:4699 original size:216 final size:216
Alignment explanation
Indices: 4314--4716 Score: 564
Period size: 216 Copynumber: 1.9 Consensus size: 216
4304 GACAAGGGCC
* * * * *
4314 ATCGGCAAATGCCGACGCCAAGGCCAGGGGTCATCGGCAAATGCCGACACCAAGGCCATGGGCCA
1 ATCGGCAAATCCCGACACCAAGGCAACGGGCCATCGGCAAATGCCGACACCAAGGCCATGGGCCA
* * * * *
4379 TCGGCATATGCCGACGCCAAGGCCATGGGCATCGGCAAATGCCGACGCCAAGATCATGGGCATCC
66 TCGGCAAATGCCGACGCCAAGGCCAAGGGCATCGGCAAATGCCAACACCAAGACCATGGGCATCC
* *
4444 GTAAATGCCGACGCCAAGGCCAGGGCCATCGGCAAATGCCGACGCCAAGGCCGAGGGGACAAGGG
131 GCAAATGCCGACGCCAAGGCCAGGGCCATCGGCAAATGCCGACGCCAAGGCCAAGGGGACAAGGG
4509 ACATCATCAAATTCCAACGCA
196 ACATCATCAAATTCCAACGCA
* *
4530 ATCGGCAAATCCCGATACCAAGGCAACGGGCCATCGGCAAATGCCGACGA-CTAGGCCATGGG-C
1 ATCGGCAAATCCCGACACCAAGGCAACGGGCCATCGGCAAATGCCGAC-ACCAAGGCCATGGGCC
*
4593 ATCGGCAAATGCCGACGCCAAGGTCAAGGGCCATCGGCAAATGCCAACACCAA-AGCCATGGGCC
65 ATCGGCAAATGCCGACGCCAAGGCCAAGGG-CATCGGCAAATGCCAACACCAAGA-CCATGGG-C
* * *
4657 ATCGGCAAATGCCG-TGCCAAGGCCATGGG-CATCGGTAAATGCCGACGCCAAGGCCAAGGG
127 ATCCGCAAATGCCGACGCCAAGGCCA-GGGCCATCGGCAAATGCCGACGCCAAGGCCAAGGG
4717 CATGGGCAAA
Statistics
Matches: 164, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
215 29 0.18
216 118 0.72
217 17 0.10
ACGTcount: A:0.29, C:0.31, G:0.30, T:0.11
Consensus pattern (216 bp):
ATCGGCAAATCCCGACACCAAGGCAACGGGCCATCGGCAAATGCCGACACCAAGGCCATGGGCCA
TCGGCAAATGCCGACGCCAAGGCCAAGGGCATCGGCAAATGCCAACACCAAGACCATGGGCATCC
GCAAATGCCGACGCCAAGGCCAGGGCCATCGGCAAATGCCGACGCCAAGGCCAAGGGGACAAGGG
ACATCATCAAATTCCAACGCA
Found at i:4727 original size:247 final size:248
Alignment explanation
Indices: 4282--4747 Score: 699
Period size: 247 Copynumber: 1.9 Consensus size: 248
4272 ACCAAGGGAC
* *
4282 ATCGGCAAATGCCGACGACAAGGACAAGGGCCATCGGCAAATGCCGACGCCAAGGCCAGGGGTCA
1 ATCGGCAAATCCCGACGACAAGGACAAGGGCCATCGGCAAATGCCGACGACAAGGCCAGGGGTCA
* * * * *
4347 TCGGCAAATGCCGACACCAAGGCCATGGGCCATCGGCATATGCCGACGCCAAGGCCATGGGCATC
66 TCGGCAAATGCCGACACCAAGGCCAAGGGCCATCGGCAAATGCCAACACCAAAGCCATGGGCATC
*
4412 GGCAAATGCCGACGCCAAGATCATGGGCATCCGTAAATGCCGACGCCAAGGCCAGGGCCATCGGC
131 GGCAAATGCCGACGCCAAGACCATGGGCATCCGTAAATGCCGACGCCAAGGCCAGGGCCATCGGC
*
4477 AAATGCCGACGCCAAGGCCGAGGGGACAAGGGACATCATCAAATTCCAACGCA
196 AAATGCCGACGCCAAGGCCAAGGGGACAAGGGACATCATCAAATTCCAACGCA
* * *
4530 ATCGGCAAATCCCGA-TACCAAGG-CAACGGGCCATCGGCAAATGCCGACGACTAGGCCATGGG-
1 ATCGGCAAATCCCGACGA-CAAGGACAA-GGGCCATCGGCAAATGCCGACGACAAGGCCAGGGGT
* *
4592 CATCGGCAAATGCCGACGCCAAGGTCAAGGGCCATCGGCAAATGCCAACACCAAAGCCATGGGCC
64 CATCGGCAAATGCCGACACCAAGGCCAAGGGCCATCGGCAAATGCCAACACCAAAGCCATGGG-C
* * *
4657 ATCGGCAAATGCCG-TGCCAAGGCCATGGGCATCGGTAAATGCCGACGCCAAGGCCAAGGG-CAT
128 ATCGGCAAATGCCGACGCCAAGACCATGGGCATCCGTAAATGCCGACGCCAAGGCC-AGGGCCAT
*
4720 GGGCAAATGCCGACGCCAAGGCCAAGGG
192 CGGCAAATGCCGACGCCAAGGCCAAGGG
4748 CATGGGCAAA
Statistics
Matches: 196, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
247 126 0.64
248 70 0.36
ACGTcount: A:0.29, C:0.31, G:0.30, T:0.10
Consensus pattern (248 bp):
ATCGGCAAATCCCGACGACAAGGACAAGGGCCATCGGCAAATGCCGACGACAAGGCCAGGGGTCA
TCGGCAAATGCCGACACCAAGGCCAAGGGCCATCGGCAAATGCCAACACCAAAGCCATGGGCATC
GGCAAATGCCGACGCCAAGACCATGGGCATCCGTAAATGCCGACGCCAAGGCCAGGGCCATCGGC
AAATGCCGACGCCAAGGCCAAGGGGACAAGGGACATCATCAAATTCCAACGCA
Found at i:4912 original size:31 final size:32
Alignment explanation
Indices: 4842--4919 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 32
4832 CCGACGCAAT
** *
4842 CGGCAAATGCCGATACCAAGGCAACGGGCCAT
1 CGGCAAATGCCGACGCCAAGGCAACGGGCCAC
* * *
4874 CGGCAAATGCCGACGCCTAGGCCATGGG-CAC
1 CGGCAAATGCCGACGCCAAGGCAACGGGCCAC
4905 CGGCAAATGCCGACG
1 CGGCAAATGCCGACG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 17 0.43
32 23 0.57
ACGTcount: A:0.27, C:0.33, G:0.31, T:0.09
Consensus pattern (32 bp):
CGGCAAATGCCGACGCCAAGGCAACGGGCCAC
Done.