Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010284.1 Corchorus capsularis cultivar CVL-1 contig10305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21409
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:5806 original size:3 final size:3

Alignment explanation


    Indices: 5798--5840  Score: 86
    Period size: 3  Copynumber: 14.3  Consensus size: 3

       5788 AGTAGCTGAG

                                                                     
       5798 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A

       5841 CTTGGCCCCA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   40  1.00

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (3 bp):   
ATT

Found at i:18548 original size:2 final size:2

Alignment explanation


    Indices: 18536--18564  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

      18526 TATTATAAAC

                                                        
      18536 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      18565 CAGATCTTGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.