Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010285.1 Corchorus capsularis cultivar CVL-1 contig10306, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10330
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1499 original size:55 final size:55

Alignment explanation


    Indices: 1415--1525  Score: 222
    Period size: 55  Copynumber: 2.0  Consensus size: 55

       1405 ATATGATTAT

                                                                   
       1415 GTATATGAAATTTCCGCGTGGAAAAGAAATATTATTATAATTGTAAAGAAATAAA
          1 GTATATGAAATTTCCGCGTGGAAAAGAAATATTATTATAATTGTAAAGAAATAAA

                                                                   
       1470 GTATATGAAATTTCCGCGTGGAAAAGAAATATTATTATAATTGTAAAGAAATAAA
          1 GTATATGAAATTTCCGCGTGGAAAAGAAATATTATTATAATTGTAAAGAAATAAA

             
       1525 G
          1 G

       1526 ATCAGATCTT


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   56  1.00

ACGTcount: A:0.47, C:0.05, G:0.17, T:0.31


Consensus pattern (55 bp):   
GTATATGAAATTTCCGCGTGGAAAAGAAATATTATTATAATTGTAAAGAAATAAA

Found at i:6419 original size:2 final size:2

Alignment explanation


    Indices: 6407--6444  Score: 60
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       6397 ATATAGTTAG

                                  *                                   
       6407 AT AT AT A- AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       6445 AATAAAATTC


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   32  0.97

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (2 bp):   
AT

Done.