Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010287.1 Corchorus capsularis cultivar CVL-1 contig10308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94811

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2973--3032
31
1.9
31
86
6
86
28
21
15
35
1.93
3563--3604
21
2.0
22
90
4
68
45
0
11
42
1.41
4945--4969
11
2.3
11
100
0
50
76
0
0
24
0.80
13021--13124
49
2.1
49
100
0
208
41
18
11
28
1.85
13458--13495
20
1.9
20
88
0
58
15
23
5
55
1.61
13752--13778
8
3.4
8
100
0
54
11
22
0
66
1.22
24962--25006
2
22.5
2
100
0
90
0
51
0
48
1.00
36004--36028
6
4.2
6
100
0
50
0
16
0
84
0.63
39176--39212
9
4.1
9
93
6
58
2
8
0
89
0.58
63404--63482
40
1.9
40
84
5
104
39
16
16
27
1.90
64943--65054
14
8.1
14
69
11
70
45
5
7
41
1.54
64950--65071
27
4.4
27
68
7
84
43
4
6
45
1.51
64932--65097
41
4.0
41
95
0
296
43
4
6
45
1.51
65411--65448
11
3.5
11
89
10
51
39
0
2
57
1.12
69351--69392
16
2.7
15
82
17
50
73
2
2
21
1.06
74449--74474
2
13.0
2
100
0
52
50
50
0
0
1.00
74474--74498
2
12.5
2
100
0
50
52
0
0
48
1.00
77358--77405
18
2.6
18
90
3
69
8
45
8
37
1.64
79113--79187
29
2.5
29
95
4
132
38
17
5
38
1.72
82747--82876
62
2.0
65
92
5
221
38
3
17
40
1.68
88523--88668
66
2.2
65
84
9
190
30
10
11
47
1.74
88639--88848
115
1.8
118
90
4
347
39
7
18
35
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94778--94805
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!