Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010290.1 Corchorus capsularis cultivar CVL-1 contig10311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29046

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2909
329
8.9
330
88
3
4220
34
17
15
32
1.91
1--2907
974
3.0
979
90
3
4472
34
17
15
32
1.91
2840--2978
69
2.0
69
97
0
260
28
15
14
41
1.86
14069--14097
2
15.0
2
92
7
51
48
0
0
51
1.00
15424--15689
51
5.3
51
62
23
152
29
24
19
26
1.99
15475--15638
48
3.4
48
65
20
122
27
24
19
28
1.99
14866--15856
99
10.0
99
92
0
1531
27
22
21
27
1.99
16224--16650
231
1.8
232
89
2
671
27
24
17
30
1.97
18107--18354
66
3.8
66
92
1
392
17
26
17
38
1.92
18172--18768
287
2.0
292
89
4
918
20
25
16
37
1.93
18460--18720
66
4.0
66
95
1
454
17
25
17
39
1.92
18008--18707
353
2.0
354
96
0
1294
19
26
16
37
1.93
25211--25237
6
4.5
6
100
0
54
0
14
0
85
0.61
28239--28423
44
4.2
44
74
8
146
32
13
14
39
1.85
28240--28407
22
7.7
22
72
10
114
33
14
14
38
1.86
28392--28529
68
2.0
69
91
1
224
35
10
15
37
1.83
28394--28500
34
3.1
34
61
19
78
37
7
15
39
1.76
28580--28615
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!