Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010293.1 Corchorus capsularis cultivar CVL-1 contig10314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182099

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5038--5091
27
2.0
27
92
0
90
33
14
14
37
1.88
11087--11112
2
13.0
2
100
0
52
50
0
0
50
1.00
22222--22383
33
4.9
33
95
1
281
12
37
35
14
1.84
27394--27439
1
46.0
1
95
0
83
97
0
2
0
0.15
29476--29539
34
1.9
33
83
3
83
39
6
1
53
1.36
29651--29692
14
2.9
14
96
3
75
50
0
0
50
1.00
31927--32008
21
3.8
22
73
23
77
58
0
3
37
1.16
40226--40257
7
4.7
7
96
3
57
0
9
0
90
0.45
52387--53075
228
3.0
228
80
1
763
23
27
20
28
1.99
59711--59747
16
2.4
15
86
8
56
67
0
0
32
0.91
61583--61618
14
2.3
17
86
13
51
25
0
5
69
1.10
67952--68863
228
4.0
228
86
1
1078
21
24
25
28
1.99
70371--70467
49
2.0
49
91
0
158
24
18
38
18
1.93
70542--70567
2
13.0
2
100
0
52
50
0
0
50
1.00
80666--80743
41
1.9
41
91
0
129
29
15
14
41
1.86
81480--81523
11
4.1
11
80
13
56
63
0
0
36
0.95
81472--81522
14
3.6
13
87
12
66
60
0
0
39
0.97
113292--113363
21
3.6
20
87
5
85
69
4
1
25
1.14
113317--113363
16
3.0
16
81
3
51
68
2
2
27
1.13
114722--114746
12
2.1
12
100
0
50
32
8
44
16
1.76
115066--115112
21
2.2
21
92
0
76
29
4
29
36
1.77
116701--116790
25
3.6
25
80
0
108
24
33
26
15
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116639--116885
130
1.9
130
96
0
458
25
31
24
17
1.97
125109--125172
30
2.1
30
94
0
110
32
20
15
31
1.94
125731--125763
15
2.1
16
88
5
50
39
3
57
0
1.14
132043--132078
6
6.2
6
96
3
65
52
13
16
16
1.74
132622--132652
2
15.5
2
100
0
62
48
0
0
51
1.00
133715--133752
17
2.2
18
86
13
53
36
0
2
60
1.11
144172--144243
21
3.3
21
70
14
74
26
20
27
25
1.99
144191--144260
23
3.1
23
68
15
74
27
21
28
22
1.99
144172--144260
44
2.0
44
100
0
178
26
20
28
24
1.99
147668--147716
21
2.4
21
83
10
57
34
32
12
20
1.90
149115--149148
2
17.0
2
100
0
68
50
0
0
50
1.00
156770--156797
2
14.0
2
100
0
56
50
0
50
0
1.00
166680--166748
29
2.3
31
77
5
79
43
18
10
27
1.82
167191--167227
19
1.9
19
94
0
65
16
29
13
40
1.86

Tables:   1

The End!