Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010298.1 Corchorus capsularis cultivar CVL-1 contig10319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80793

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11328--11371
22
1.9
22
81
9
52
38
9
9
43
1.68
21296--21341
23
2.0
23
95
0
83
15
34
19
30
1.93
30894--30959
31
2.1
31
86
5
89
31
18
4
45
1.69
31056--31152
38
2.6
37
83
4
131
14
19
8
57
1.62
31287--31324
19
2.0
20
85
15
53
28
5
2
63
1.30
31490--31618
22
5.9
22
67
17
79
37
10
13
37
1.79
31492--31618
44
2.9
44
77
6
132
38
10
13
37
1.79
31492--31639
44
3.3
46
75
11
119
39
10
12
37
1.78
31489--31673
22
8.3
22
69
7
77
35
8
16
38
1.80
31751--31826
22
3.5
21
74
12
73
39
6
18
35
1.77
31709--31826
44
2.7
43
74
16
107
37
7
19
35
1.80
31904--31948
21
2.1
22
88
12
67
51
8
11
28
1.68
31912--32070
22
7.3
22
73
10
112
44
9
12
33
1.75
32026--32077
22
2.4
22
87
3
79
42
7
13
36
1.73
32183--32234
20
2.6
20
93
0
86
42
13
17
26
1.86
32255--32460
103
2.0
106
80
4
240
42
9
14
33
1.79
32360--32466
23
4.7
23
81
2
101
39
10
14
35
1.81
32244--32466
45
5.2
44
72
12
140
42
9
14
33
1.79
32256--32681
22
19.6
21
69
13
177
38
10
15
35
1.82
32645--32689
22
2.1
22
84
8
58
51
4
17
26
1.65
46212--46241
15
2.0
15
93
0
51
33
30
10
26
1.89
58658--58692
8
4.4
8
85
0
52
51
20
2
25
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58808--59041
34
7.0
34
90
2
343
23
29
19
28
1.98
71482--71525
20
2.2
20
100
0
88
40
4
9
45
1.56
73477--73528
26
2.0
26
100
0
104
26
26
15
30
1.96

Tables:   1

The End!