Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010302.1 Corchorus capsularis cultivar CVL-1 contig10323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6774

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90--591
31
16.1
31
80
2
529
31
29
27
11
1.92
90--746
63
10.5
62
76
4
561
31
29
27
11
1.92
624--739
32
3.7
30
80
9
99
30
30
26
12
1.93
87--739
280
2.3
277
79
5
701
31
29
27
11
1.92
498--824
154
2.1
153
86
2
440
30
30
25
12
1.92
652--730
31
2.5
32
93
4
142
26
32
29
11
1.91
687--918
91
2.5
92
83
3
297
31
30
24
13
1.93
868--949
32
2.6
32
92
1
130
30
30
28
10
1.91
1564--2119
31
17.7
31
82
2
619
30
29
30
10
1.90
1564--2119
63
8.9
62
82
2
612
30
29
30
10
1.90
2158--2246
31
2.8
31
81
5
99
30
31
25
12
1.92
2036--2326
122
2.4
122
80
5
311
30
29
26
13
1.94
2158--2232
32
2.4
31
84
6
89
30
30
26
12
1.92
2183--2425
94
2.6
93
78
6
280
31
30
24
13
1.93
2825--3004
32
5.6
32
80
10
163
32
31
27
8
1.87
2823--3004
63
2.8
64
86
6
219
31
31
28
8
1.87
3303--3416
25
4.3
25
77
12
120
30
29
29
9
1.89
2823--3605
31
25.4
30
73
11
449
30
28
29
10
1.91
2823--3605
62
12.7
61
73
11
498
30
28
29
10
1.91
3602--6035
322
7.5
322
87
3
3323
32
13
15
38
1.87
5579--6504
479
1.9
475
85
5
1269
32
11
16
39
1.85
6065--6746
314
2.2
315
83
5
846
32
13
15
38
1.86

Tables:   1

The End!