Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010303.1 Corchorus capsularis cultivar CVL-1 contig10324, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60966

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
991--1028
2
19.0
2
100
0
76
50
0
0
50
1.00
2557--2615
2
28.5
2
83
6
73
45
0
8
45
1.33
2557--2615
21
2.9
21
87
2
75
45
0
8
45
1.33
8916--8942
3
9.0
3
100
0
54
33
0
33
33
1.58
10082--10204
60
2.0
60
100
0
246
44
16
13
26
1.83
13055--13155
48
2.1
48
98
0
193
22
27
1
47
1.62
15089--15152
31
2.2
30
81
13
71
37
7
20
34
1.81
30330--30364
2
17.5
2
100
0
70
48
0
0
51
1.00
42623--42859
130
1.8
130
98
0
456
29
18
12
39
1.87
56909--56938
2
15.0
2
100
0
60
50
0
0
50
1.00
59496--59603
54
2.0
54
100
0
216
35
12
18
33
1.89
60829--60872
18
2.4
18
88
0
70
20
25
29
25
1.99

Tables:   1

The End!