Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010311.1 Corchorus capsularis cultivar CVL-1 contig10332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36518

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--143
26
2.6
26
81
9
93
33
2
10
52
1.50
152--211
25
2.5
25
86
5
79
43
0
20
36
1.52
13316--13341
13
2.0
13
100
0
52
38
30
0
30
1.58
17599--17652
11
5.5
10
75
16
51
27
0
0
72
0.85
17622--17664
8
5.1
8
86
8
50
34
0
0
65
0.93
17611--17661
18
2.7
19
84
6
68
29
0
0
70
0.87
17612--17664
26
2.0
26
89
7
81
32
0
0
67
0.91
17657--17734
31
2.5
31
91
2
122
38
14
15
32
1.87
18828--18852
7
3.6
7
100
0
50
0
44
0
56
0.99
22847--22976
62
2.1
62
85
2
172
33
13
6
46
1.69
23212--23316
45
2.3
46
83
4
124
40
13
8
38
1.75
22931--23528
22
27.3
22
69
12
243
35
16
9
38
1.81
23629--23670
22
1.9
22
90
0
66
33
9
9
47
1.68
23636--23684
22
2.3
22
78
3
55
40
10
6
42
1.63
26055--26278
91
2.5
91
91
2
344
35
12
19
31
1.90
26367--26450
45
1.9
44
80
4
98
40
25
13
21
1.89
26363--26551
104
1.9
99
83
7
245
40
23
11
25
1.87
36428--36518
2
45.5
2
100
0
182
49
0
50
0
1.00

Tables:   1

The End!