Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010313.1 Corchorus capsularis cultivar CVL-1 contig10334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114502

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--702
185
3.8
185
99
0
1381
31
17
10
40
1.83
1--702
369
1.9
369
99
0
1388
31
17
10
40
1.83
2507--2569
30
2.1
30
100
0
126
26
20
26
25
1.99
3703--3732
15
2.0
15
93
0
51
83
0
10
6
0.81
3878--3914
14
2.6
14
91
4
56
54
0
0
45
1.00
14585--14718
60
2.3
57
83
6
162
35
15
19
29
1.93
14763--14932
60
2.8
60
82
0
207
31
15
15
36
1.90
33459--33495
14
2.6
14
86
0
56
48
27
0
24
1.51
35647--35707
27
2.4
24
86
8
77
32
1
44
21
1.62
35584--35677
21
4.5
21
86
2
127
30
3
42
23
1.70
37417--37586
58
2.9
60
87
4
265
33
18
19
28
1.96
37630--37729
31
3.3
31
71
10
98
27
18
16
39
1.91
37630--37789
60
2.7
60
86
1
205
28
16
16
37
1.91
43318--43348
1
31.0
1
100
0
62
0
0
0
100
0.00
46539--46586
2
24.5
2
84
16
57
47
0
4
47
1.21
57335--57439
51
2.1
51
98
0
201
20
23
28
26
1.99
57544--57601
30
1.9
30
96
0
107
25
13
27
32
1.94
57536--57597
30
2.0
33
87
9
94
25
12
29
32
1.93
57634--57702
18
3.8
18
86
7
95
18
2
40
37
1.66
57849--57993
36
3.9
36
74
10
146
21
42
6
29
1.79
57821--57985
78
2.1
78
91
0
267
21
43
7
27
1.79
57928--57993
18
3.7
17
75
16
62
21
42
7
28
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61035--61069
11
3.2
11
88
11
54
0
2
5
91
0.50
61036--61066
16
1.9
16
93
0
53
0
3
6
90
0.55
61037--61077
16
2.6
16
81
11
50
0
4
9
85
0.73
61346--61379
2
17.0
2
100
0
68
0
50
0
50
1.00
75103--75127
2
12.5
2
100
0
50
52
0
0
48
1.00
81582--81627
24
1.9
24
95
0
83
32
13
13
41
1.82
99529--99635
20
5.2
20
72
17
69
0
35
0
64
0.94
99538--99592
15
3.4
16
82
14
60
0
34
0
65
0.93
99522--99626
17
6.4
17
71
22
55
0
38
0
61
0.96
99523--99636
10
11.5
10
68
20
53
0
36
0
63
0.95
100990--101021
14
2.3
14
100
0
64
18
15
12
53
1.73
101143--105098
332
11.7
331
78
7
3501
36
15
15
33
1.88
103671--103700
2
15.0
2
92
0
51
50
3
0
46
1.18
105521--107040
311
4.8
313
77
10
1277
33
13
15
37
1.86
108782--113709
331
15.0
326
79
7
4723
35
14
15
33
1.89
111262--113709
333
7.4
331
81
6
2541
35
15
16
33
1.89

Tables:   1

The End!