Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010315.1 Corchorus capsularis cultivar CVL-1 contig10336, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  230436

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14482--14556
36
2.1
36
97
0
141
21
25
21
32
1.98
16970--16996
2
13.5
2
100
0
54
48
0
0
51
1.00
20436--20465
14
2.1
14
100
0
60
53
20
13
13
1.72
27033--27186
69
2.2
70
85
7
199
37
11
1
49
1.48
35571--35608
11
3.5
11
85
10
51
57
0
0
42
0.98
35931--36009
41
1.9
42
92
2
133
48
7
5
39
1.54
60420--60466
3
15.7
3
86
0
67
59
2
36
2
1.21
65512--65558
24
2.0
24
100
0
94
25
27
21
25
1.99
67736--67773
2
18.0
2
89
10
58
47
2
47
2
1.30
80985--81018
7
4.9
7
96
0
59
76
8
0
14
1.01
81631--81672
2
21.5
2
87
4
59
52
0
2
45
1.13
88939--88972
6
5.5
6
89
3
50
23
29
0
47
1.52
91014--91072
29
2.0
30
83
12
77
44
13
20
22
1.86
92535--92582
11
4.4
11
84
7
53
54
2
2
41
1.24
93058--93096
18
2.2
18
100
0
78
23
5
20
51
1.67
124612--124690
24
3.3
24
67
0
68
11
15
50
22
1.75
124590--124710
48
2.5
48
98
0
233
10
20
48
19
1.78
129612--129638
2
13.5
2
100
0
54
51
0
0
48
1.00
136900--136960
31
2.0
31
100
0
122
37
9
16
36
1.82
138509--138537
2
14.5
2
100
0
58
51
0
0
48
1.00
169497--169528
3
10.7
3
100
0
64
31
0
0
68
0.90
170007--170086
39
2.1
39
100
0
160
42
12
15
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170115--170480
193
1.9
193
90
2
592
30
14
22
32
1.94
182742--182879
31
4.5
31
82
0
150
18
23
26
32
1.97
182742--182882
62
2.3
62
86
0
192
17
22
26
33
1.96
190130--190219
31
2.9
31
83
0
108
20
18
25
35
1.95
190169--190271
53
1.9
52
86
7
145
17
17
26
38
1.92
198807--198837
2
15.5
2
100
0
62
48
0
0
51
1.00
198974--199010
11
3.4
11
92
0
65
45
8
2
43
1.47
199305--199650
142
2.4
142
99
0
674
41
13
7
37
1.73
210053--210148
45
2.1
45
81
12
108
57
5
3
34
1.37
211373--211416
18
2.4
18
80
3
52
34
2
52
11
1.50
215514--215558
2
21.5
2
91
8
72
48
4
0
46
1.22
226688--226751
22
2.7
23
88
7
85
0
21
0
78
0.76
226676--226755
6
13.7
6
74
18
71
1
18
0
80
0.79
227447--227514
26
2.7
25
84
4
100
13
14
32
39
1.85
230256--230335
28
2.8
28
88
5
106
26
25
12
36
1.91

Tables:   1

The End!