genome.fa.s10319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010319.1 Corchorus capsularis cultivar CVL-1 contig10340, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194590

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250--1157	302	3.0	303	88	6	1248	36	16	14	33	1.89
1518--4745	650	4.9	640	80	8	3384	36	15	14	34	1.87
9401--9446	4	11.5	4	90	0	74	71	28	0	0	0.86
21481--21530	26	1.9	26	84	8	66	52	10	18	20	1.73
25312--25337	2	13.0	2	100	0	52	50	0	0	50	1.00
27872--27912	11	3.7	11	87	12	57	56	2	0	41	1.13
34904--34963	29	2.1	29	100	0	120	45	10	35	10	1.71
36656--36685	1	30.0	1	100	0	60	100	0	0	0	0.00
36856--36901	22	2.1	22	95	0	83	52	17	13	17	1.75
38352--38418	35	1.9	35	100	0	134	38	7	11	41	1.70
42564--42619	28	1.9	29	89	7	87	58	10	7	23	1.56
46768--46817	2	26.5	2	82	11	61	46	2	0	52	1.12
57447--57478	13	2.5	13	94	0	55	65	15	18	0	1.27
65808--65867	31	1.9	31	86	6	86	45	3	16	35	1.64
71802--71870	33	2.1	33	81	5	77	42	14	5	37	1.70
93609--93786	72	2.5	72	94	0	302	29	12	20	37	1.89
93898--94190	91	3.2	91	73	16	287	34	13	20	31	1.91
94951--95428	146	3.2	146	67	22	418	33	13	21	32	1.92
94912--95509	297	2.0	299	96	1	1094	33	13	20	32	1.92
102236--102268	17	1.9	17	88	11	50	30	30	3	36	1.73
105161--105201	20	2.0	21	95	4	75	31	24	19	24	1.98
107275--107307	13	2.5	13	95	0	57	0	0	9	90	0.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119375--119400	2	13.0	2	100	0	52	50	0	0	50	1.00
147230--147279	17	3.0	17	69	16	50	50	28	10	12	1.71
147644--147706	23	2.7	24	85	5	83	22	22	20	34	1.96
147673--147747	24	3.1	24	90	3	116	16	29	25	29	1.96
166478--166523	23	2.0	23	95	0	83	26	21	10	41	1.86
166851--167155	153	2.0	154	90	3	481	24	24	16	34	1.95
170186--170224	9	4.3	9	83	9	53	35	0	64	0	0.94
172655--172683	3	9.7	3	100	0	58	0	34	0	65	0.93
186818--187082	107	2.5	106	90	2	415	43	9	6	40	1.64
193278--193310	16	2.1	16	88	11	50	60	0	3	36	1.12

Tables:   1

The End!