Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010325.1 Corchorus capsularis cultivar CVL-1 contig10346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189634

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464--499
16
2.2
16
95
0
63
25
11
5
58
1.54
6716--6873
78
2.0
78
100
0
316
46
22
6
24
1.75
8618--8661
19
2.3
19
88
4
61
20
22
6
50
1.72
44176--44353
64
2.8
64
88
2
261
37
25
10
26
1.88
46134--46239
39
2.7
39
95
1
194
23
7
6
62
1.46
46763--47034
101
2.6
103
96
2
494
31
27
12
27
1.93
59033--59063
16
1.9
16
93
0
53
6
19
35
38
1.77
62363--62465
38
2.7
38
96
3
190
20
14
12
52
1.74
63941--63987
23
2.0
23
100
0
94
12
17
12
57
1.65
70952--70976
13
1.9
13
100
0
50
36
8
0
56
1.29
94525--94567
23
1.9
23
85
4
61
6
9
39
44
1.64
95733--95759
14
1.9
14
100
0
54
29
22
0
48
1.51
97051--97090
14
2.6
16
84
15
57
27
12
0
60
1.33
97713--97766
24
2.2
24
90
0
90
35
25
18
20
1.95
99657--99714
17
3.5
17
77
13
57
37
25
25
10
1.88
99651--99714
33
1.9
33
93
0
110
35
23
26
14
1.93
99651--99703
16
3.1
18
73
15
67
33
22
26
16
1.96
100630--100670
20
2.0
20
95
0
73
39
29
7
24
1.82
107360--107410
20
2.7
18
82
14
59
5
21
0
72
1.05
107360--107421
16
3.8
17
71
16
58
6
19
0
74
1.03
110227--110255
13
2.3
13
94
5
51
13
10
34
41
1.79
110443--110471
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111941--111975
18
1.9
18
88
0
52
5
11
40
42
1.65
112173--112220
22
2.2
22
96
0
87
54
0
8
37
1.31
112865--112891
2
13.5
2
100
0
54
0
0
48
51
1.00
122029--122175
75
2.0
75
94
2
260
32
12
10
44
1.77
125267--125291
12
2.1
12
100
0
50
0
8
0
92
0.40
127441--127467
2
13.5
2
100
0
54
51
0
0
48
1.00
128139--128248
51
2.1
51
83
3
130
33
13
9
43
1.76
138766--138839
36
2.2
33
90
7
112
39
16
18
25
1.91
140045--140089
23
1.9
24
90
4
74
22
8
15
53
1.69
142322--142349
2
14.0
2
100
0
56
50
0
0
50
1.00
145916--145956
16
2.8
15
79
13
50
12
14
4
68
1.36
150431--150468
10
4.1
9
87
12
51
0
21
0
78
0.74
150435--150476
6
6.8
6
79
15
50
0
19
0
80
0.70
168321--168356
5
7.8
5
85
14
51
0
13
0
86
0.58
168322--168360
9
4.6
9
84
9
55
0
15
0
84
0.62
168321--168358
18
2.2
17
95
4
67
0
13
0
86
0.56
173214--173285
24
3.0
24
95
0
126
13
22
33
30
1.93
175489--175528
16
2.7
15
84
7
55
62
22
15
0
1.32
181993--182019
14
1.9
14
100
0
54
25
0
14
59
1.36
183130--183177
24
2.0
24
95
0
87
47
16
14
20
1.82
188571--188607
7
5.6
7
90
9
60
0
13
0
86
0.57

Tables:   1

The End!