Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010327.1 Corchorus capsularis cultivar CVL-1 contig10348, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8598
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34


Found at i:7813 original size:2 final size:2

Alignment explanation


    Indices: 7806--7841  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       7796 ACAATTATTT

                                              *                  
       7806 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       7842 GCAACCACAT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:8580 original size:2 final size:2

Alignment explanation


    Indices: 8573--8598  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       8563 ACCGACCGTG

                                                  
       8573 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.