Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010328.1 Corchorus capsularis cultivar CVL-1 contig10349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94577

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
509--543
16
2.1
17
89
5
54
31
2
25
40
1.70
7252--7280
2
14.5
2
100
0
58
51
0
48
0
1.00
10776--10817
12
3.5
12
86
0
57
7
7
50
35
1.57
16769--16808
21
1.9
21
85
10
55
47
0
20
32
1.50
18828--18908
29
2.8
28
79
7
90
24
19
14
40
1.90
19599--19656
29
2.0
29
89
0
89
44
15
20
18
1.86
29001--29026
12
2.2
12
100
0
52
50
19
15
15
1.79
31393--31417
7
3.6
7
100
0
50
88
0
12
0
0.53
45197--45282
42
2.0
45
86
11
126
33
9
18
38
1.83
46265--46314
7
7.4
7
97
2
86
58
28
14
0
1.37
49500--49536
19
1.9
19
88
0
56
56
0
0
43
0.99
59939--60630
231
3.0
231
100
0
1384
36
15
17
29
1.91
71201--71226
7
3.7
7
100
0
52
30
0
26
42
1.56
91945--91977
2
16.5
2
93
0
57
45
0
3
51
1.16
94211--94237
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!