Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010331.1 Corchorus capsularis cultivar CVL-1 contig10352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78571

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1816
324
5.6
323
83
4
2177
36
15
13
34
1.87
2494--2639
73
2.0
73
90
1
231
39
11
17
30
1.86
28875--29115
120
2.0
120
95
0
437
41
21
9
26
1.84
30684--30785
52
2.0
52
94
0
177
32
20
14
32
1.93
30913--30997
43
2.0
42
93
2
143
43
14
12
29
1.82
30916--30987
21
3.4
22
74
12
78
45
12
12
29
1.78
44305--44447
44
3.2
44
86
3
182
39
11
17
32
1.85
44331--44447
22
5.3
22
72
9
103
40
11
17
31
1.84
44280--44447
66
2.6
65
78
7
162
38
13
16
31
1.88
44482--45886
326
4.2
325
81
7
1489
33
14
16
36
1.88
55094--55123
7
4.3
7
95
0
51
26
20
40
13
1.89
72401--72522
60
2.0
60
96
0
226
36
22
17
22
1.94
73892--73920
1
29.0
1
100
0
58
0
0
0
100
0.00
74741--74807
33
2.2
29
76
20
75
5
37
19
37
1.76
74798--74865
33
2.1
33
97
0
127
8
41
16
33
1.79
74815--74865
15
3.0
18
66
16
54
7
45
13
33
1.73
74880--74907
12
2.3
12
100
0
56
14
0
25
60
1.34

Tables:   1

The End!