Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010332.1 Corchorus capsularis cultivar CVL-1 contig10353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100279

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1463--1502
21
1.9
21
89
0
62
47
2
32
17
1.61
1497--1588
42
2.2
42
86
0
121
30
17
28
23
1.97
6150--6176
12
2.2
12
100
0
54
37
22
0
40
1.54
6347--6402
27
2.1
27
96
0
103
19
39
10
30
1.86
6666--6715
25
2.0
26
96
4
93
24
18
18
40
1.91
8129--8160
12
2.7
12
90
0
55
25
21
37
15
1.93
8177--8246
34
2.1
34
100
0
140
31
2
27
38
1.71
18661--18697
17
2.2
17
95
0
65
51
13
18
16
1.76
38442--38486
18
2.7
16
93
6
72
28
13
0
57
1.36
60639--60669
1
31.0
1
100
0
62
100
0
0
0
0.00
63593--63617
11
2.3
11
100
0
50
0
8
16
76
1.02
70676--70717
3
14.0
3
80
9
50
2
2
30
64
1.19
71269--71306
17
2.3
17
95
4
69
18
23
13
44
1.85
81213--81278
32
2.1
32
85
5
89
28
6
16
48
1.70
83654--83751
40
2.3
43
89
10
166
50
4
6
39
1.46
83731--83779
9
5.8
9
79
13
59
40
0
0
59
0.98
83731--83799
33
2.1
33
83
5
86
42
0
1
56
1.08
90565--90599
6
5.8
6
100
0
70
14
68
0
17
1.21
100246--100277
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!