genome.fa.s10333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010333.1 Corchorus capsularis cultivar CVL-1 contig10354, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113475

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054--1111	26	2.4	25	82	8	66	34	1	1	62	1.16
5238--5264	7	3.9	7	100	0	54	29	25	14	29	1.95
5625--5655	2	15.5	2	100	0	62	48	0	0	51	1.00
5902--5972	31	2.3	31	85	2	99	16	23	21	38	1.93
8604--8652	17	2.9	17	79	11	55	24	22	18	34	1.96
8611--8659	17	2.9	16	82	8	53	24	20	20	34	1.96
36708--36744	18	2.1	18	89	0	56	37	13	45	2	1.58
36675--36737	33	1.9	33	84	12	85	33	11	52	3	1.53
42648--42677	2	14.5	2	93	6	51	46	3	0	50	1.18
43359--43387	2	14.5	2	100	0	58	51	0	0	48	1.00
52750--52780	6	5.0	6	96	4	53	51	0	16	32	1.44
59618--59645	5	5.6	5	100	0	56	17	0	0	82	0.68
69408--69439	14	2.2	15	94	5	57	0	62	0	37	0.95
81335--81380	24	1.9	24	86	0	65	60	6	19	13	1.54
83005--83092	45	2.0	45	88	0	131	19	28	19	32	1.96
88703--88767	34	1.9	34	100	0	130	50	9	4	35	1.55
91252--91580	104	3.2	104	94	0	541	29	19	17	33	1.95
98712--100536	321	5.6	319	77	8	1635	34	14	16	35	1.89
98711--100492	642	2.7	640	80	6	1994	34	14	16	35	1.89
100540--102134	328	4.9	319	75	11	1296	33	14	16	35	1.89
100555--101814	312	4.0	305	77	12	1044	33	14	16	35	1.89
102241--103239	321	3.1	313	79	9	1026	33	14	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103745--104877	320	3.5	326	80	9	1207	32	13	17	36	1.89
104960--106668	654	2.6	649	80	6	1905	33	14	16	35	1.89
106664--109078	321	7.5	317	76	11	1685	32	14	16	35	1.89
106664--109084	653	3.7	646	79	7	1779	32	14	16	35	1.89
110875--110956	31	2.6	31	84	3	103	42	14	21	20	1.88
112710--112735	13	2.0	13	100	0	52	23	7	15	53	1.67
112976--113018	18	2.4	18	85	11	54	34	4	51	9	1.55

Tables:   1

The End!