Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010340.1 Corchorus capsularis cultivar CVL-1 contig10361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133170

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13786--13813
2
14.0
2
100
0
56
50
0
0
50
1.00
15043--15075
2
17.5
2
87
12
52
48
0
0
51
1.00
15742--15780
4
9.8
4
94
0
69
48
23
0
28
1.51
24292--24317
11
2.4
11
100
0
52
92
0
7
0
0.39
30901--30953
26
2.0
26
96
0
97
28
1
18
50
1.57
50951--50975
12
2.1
12
100
0
50
52
24
0
24
1.48
57280--57400
62
2.1
58
90
9
192
31
9
10
48
1.69
67953--67987
3
11.7
3
100
0
70
0
31
0
68
0.90
76451--76563
59
1.9
59
84
12
151
33
13
15
38
1.86
78793--78950
82
1.9
82
88
7
239
50
12
12
24
1.75
80413--80440
2
14.0
2
100
0
56
50
0
0
50
1.00
91021--91234
115
1.9
115
98
0
419
36
13
17
32
1.88
130172--132946
323
8.6
323
80
10
1304
35
14
16
33
1.90
130155--133164
322
9.3
319
85
5
3439
35
14
16
33
1.90
130160--133164
965
3.1
958
84
6
3685
35
14
16
33
1.90

Tables:   1

The End!