Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010342.1 Corchorus capsularis cultivar CVL-1 contig10363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108907

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
434--486
27
2.0
27
85
7
74
39
9
1
49
1.46
19761--19785
3
8.3
3
100
0
50
68
0
32
0
0.90
22711--22737
13
2.1
13
100
0
54
0
14
0
85
0.61
36795--37008
17
13.1
17
80
6
237
33
31
13
22
1.92
36883--36908
13
2.0
13
100
0
52
38
30
7
23
1.83
36784--37008
64
3.5
64
82
6
222
33
32
12
22
1.91
36819--37008
81
2.3
80
83
5
222
32
31
13
23
1.93
40281--40367
33
2.6
33
87
0
120
18
31
26
24
1.98
40621--40714
38
2.4
38
84
7
118
18
26
34
21
1.96
40642--40759
63
1.9
62
94
1
200
16
27
31
24
1.97
41656--41868
17
13.1
17
82
6
237
32
30
14
23
1.94
41645--41869
64
3.4
67
80
6
239
32
30
13
23
1.93
42364--42563
70
2.8
69
83
5
247
35
20
20
24
1.96
50352--50416
30
2.2
30
85
0
85
21
26
29
23
1.99
55247--56359
558
2.0
547
84
6
1465
37
17
16
28
1.91
64120--64194
35
2.1
36
92
2
125
61
12
9
17
1.56
65034--65060
5
5.4
5
100
0
54
59
0
0
40
0.98
76992--77085
29
3.1
29
80
10
93
43
15
23
17
1.87
87455--87507
25
2.1
25
100
0
106
43
3
15
37
1.64
95365--95390
2
13.0
2
100
0
52
50
0
0
50
1.00
104082--104129
22
2.3
20
86
10
62
39
22
16
20
1.92
104104--104196
31
3.0
31
85
0
105
34
24
21
19
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107940--107986
21
2.2
21
92
0
76
25
14
12
46
1.80

Tables:   1

The End!