Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010348.1 Corchorus capsularis cultivar CVL-1 contig10369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63724

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1380--1405
4
6.5
4
100
0
52
50
0
0
50
1.00
3373--3450
31
2.5
31
85
2
113
16
28
26
28
1.97
6488--6520
2
16.5
2
100
0
66
0
48
0
51
1.00
11016--11100
29
2.9
29
76
10
84
31
24
16
27
1.96
12583--12679
31
3.2
31
86
1
142
34
25
22
17
1.96
12583--12716
31
4.4
31
82
1
135
32
26
22
18
1.97
12580--12740
61
2.7
61
80
2
173
33
25
22
18
1.96
14197--14230
2
17.5
2
93
6
61
47
0
0
52
1.00
31158--31187
3
10.3
3
92
7
53
70
0
30
0
0.88
32274--32330
12
4.8
12
74
6
53
1
24
1
71
1.04
35088--35204
33
3.5
33
87
2
146
16
37
33
12
1.86
51009--51062
28
1.9
28
84
0
72
50
7
18
24
1.72
54162--54424
107
2.5
105
90
2
395
41
9
8
40
1.67
57636--57676
19
2.2
19
100
0
82
34
0
39
26
1.57

Tables:   1

The End!