Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010350.1 Corchorus capsularis cultivar CVL-1 contig10371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176294

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61--86
2
13.0
2
100
0
52
50
0
0
50
1.00
10099--10164
19
3.4
19
69
22
64
34
18
21
25
1.96
10084--10165
40
2.0
40
97
0
155
36
20
18
24
1.95
14919--14953
18
1.9
18
88
0
52
20
37
14
28
1.91
15020--15057
18
2.1
18
90
0
58
7
47
2
42
1.46
31595--31627
16
2.0
17
88
5
50
60
3
12
24
1.46
34329--34392
29
2.2
30
85
2
94
46
9
14
29
1.75
34343--34399
29
2.0
29
85
0
78
45
10
14
29
1.78
34607--34716
32
3.6
30
84
9
141
22
19
8
50
1.74
41929--41953
13
1.9
13
100
0
50
40
0
24
36
1.55
71332--71361
1
30.0
1
100
0
60
100
0
0
0
0.00
72104--72140
2
18.5
2
100
0
74
48
0
0
51
1.00
76488--76579
27
3.2
27
66
31
73
11
27
6
54
1.61
76463--76581
60
2.0
60
98
0
229
12
28
6
52
1.64
81522--81558
18
2.1
18
100
0
74
21
5
16
56
1.59
95510--101766
333
18.8
333
87
2
8354
33
14
15
35
1.88
101548--102061
219
2.3
219
95
0
920
36
10
15
37
1.82
111189--111688
249
2.0
249
100
0
1000
38
15
15
30
1.89
128536--128605
29
2.4
29
85
2
86
41
22
11
24
1.87
141588--141627
20
2.0
21
90
5
64
37
20
15
27
1.92
155116--155157
2
21.5
2
85
4
59
52
2
0
45
1.13

Tables:   1

The End!