Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010351.1 Corchorus capsularis cultivar CVL-1 contig10372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52557
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:86 original size:2 final size:2
Alignment explanation
Indices: 1--70 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
43 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
71 TTTTCATTTT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:10189 original size:25 final size:25
Alignment explanation
Indices: 10161--10212 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
10151 CTAAGCCTTC
10161 ATTATTTGTAGATTAAGAAGTTAAG
1 ATTATTTGTAGATTAAGAAGTTAAG
10186 ATTATTTGTAGATTAAGAAGTTAAG
1 ATTATTTGTAGATTAAGAAGTTAAG
10211 AT
1 AT
10213 GTACCATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (25 bp):
ATTATTTGTAGATTAAGAAGTTAAG
Found at i:15662 original size:31 final size:31
Alignment explanation
Indices: 15627--15692 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
15617 AACTTTATGT
* *
15627 TTTCCGATTGTACCCTTATT-TTTAAAACATA
1 TTTCCAATTGTACCATT-TTCTTTAAAACATA
15658 TTTCCAATTGTACCATTTTCTTTAAAACATA
1 TTTCCAATTGTACCATTTTCTTTAAAACATA
15689 TTTC
1 TTTC
15693 TAAATTGCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 2 0.06
31 30 0.94
ACGTcount: A:0.29, C:0.20, G:0.05, T:0.47
Consensus pattern (31 bp):
TTTCCAATTGTACCATTTTCTTTAAAACATA
Found at i:19263 original size:20 final size:21
Alignment explanation
Indices: 19189--19294 Score: 90
Period size: 22 Copynumber: 5.0 Consensus size: 21
19179 TGTCTCTAAG
* *
19189 TGGTTATCAAAATTTCACAAGA
1 TGGTTACCAAAATTTCA-TAGA
** *
19211 TGGTTATTATAATTTCATGAGGA
1 TGGTTACCAAAATTTCAT-A-GA
* *
19234 -GGTTATCAAAATTCCATA-A
1 TGGTTACCAAAATTTCATAGA
*
19253 TGGTTACCAAAATTTCATAGTG
1 TGGTTACCAAAATTTCATAG-A
19275 TGGTTACCAAAATTTCATAG
1 TGGTTACCAAAATTTCATAG
19295 GATCAGGTTA
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
19 1 0.01
20 16 0.23
21 1 0.01
22 50 0.71
23 2 0.03
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (21 bp):
TGGTTACCAAAATTTCATAGA
Found at i:19268 original size:42 final size:43
Alignment explanation
Indices: 19190--19294 Score: 108
Period size: 42 Copynumber: 2.4 Consensus size: 43
19180 GTCTCTAAGT
** *
19190 GGTTATCAAAATTTCACA-AGATGGTTATTATAATTTCATGAG-GA
1 GGTTATCAAAA-TTC-CATAGATGGTTACCAAAATTTCAT-AGTGA
*
19234 GGTTATCAAAATTCCATA-ATGGTTACCAAAATTTCATAGTGT
1 GGTTATCAAAATTCCATAGATGGTTACCAAAATTTCATAGTGA
* *
19276 GGTTACCAAAATTTCATAG
1 GGTTATCAAAATTCCATAG
19295 GATCAGGTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 2 0.04
42 35 0.67
43 4 0.08
44 11 0.21
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.35
Consensus pattern (43 bp):
GGTTATCAAAATTCCATAGATGGTTACCAAAATTTCATAGTGA
Found at i:19310 original size:24 final size:22
Alignment explanation
Indices: 19190--19341 Score: 89
Period size: 22 Copynumber: 6.9 Consensus size: 22
19180 GTCTCTAAGT
* * *
19190 GGTTATCAAAATTTCACAAG-A
1 GGTTATTAAAATTTCATAGGTA
*
19211 TGGTTATTATAATTTCATGAGG-A
1 -GGTTATTAAAATTTCAT-AGGTA
* * *
19234 GGTTATCAAAATTCCATA-AT-
1 GGTTATTAAAATTTCATAGGTA
**
19254 GGTTACCAAAATTTCATAGTGT-
1 GGTTATTAAAATTTCATAG-GTA
**
19276 GGTTACCAAAATTTCATAGGATCA
1 GGTTATTAAAATTTCATAGG-T-A
* * *
19300 GGTTATTAAAATCTCTTAGGTT
1 GGTTATTAAAATTTCATAGGTA
*
19322 GGTTATTGAAATTTCATAGG
1 GGTTATTAAAATTTCATAGG
19342 GTGGTTAATT
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
20 16 0.15
21 2 0.02
22 66 0.63
23 4 0.04
24 16 0.15
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (22 bp):
GGTTATTAAAATTTCATAGGTA
Found at i:19592 original size:22 final size:22
Alignment explanation
Indices: 19523--19794 Score: 157
Period size: 22 Copynumber: 12.5 Consensus size: 22
19513 TAAAAGTCTC
* *
19523 AATTTCATAG-G-GAGTACCAA
1 AATTTCATAGAGTGATTATCAA
* **
19543 AATTTGATAGAAAG-TTATC-A
1 AATTTCATAGAGTGATTATCAA
* *
19563 AATCTCATAGAGTGATTATCGA
1 AATTTCATAGAGTGATTATCAA
19585 AATTTCATAGAGATCGGATTATCAA
1 AATTTCATAGAG-T--GATTATCAA
**
19610 AATTT-ATAGAAAGATTATCAA
1 AATTTCATAGAGTGATTATCAA
*
19631 AATTTCATAGTGTTG-TTATCAA
1 AATTTCATAGAG-TGATTATCAA
* * * *
19653 AATTTCAAAGCGAGGTTATCAA
1 AATTTCATAGAGTGATTATCAA
* *
19675 AATTACATA-ATGTGATTATCAG
1 AATTTCATAGA-GTGATTATCAA
* * * *
19697 AATTTCATAGAGGGGTCAACAA
1 AATTTCATAGAGTGATTATCAA
* * * *
19719 AATTTTATAAAGAGGTTATCAA
1 AATTTCATAGAGTGATTATCAA
* * *
19741 AATTTCATAAAGAGGTTATCAA
1 AATTTCATAGAGTGATTATCAA
* *
19763 ATTTTCA-AAATGTGATTA-CAAA
1 AATTTCATAGA-GTGATTATC-AA
19785 AATTTCATAG
1 AATTTCATAG
19795 TGGTATTTCT
Statistics
Matches: 196, Mismatches: 41, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
20 20 0.10
21 27 0.14
22 127 0.65
23 4 0.02
24 5 0.03
25 13 0.07
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (22 bp):
AATTTCATAGAGTGATTATCAA
Found at i:19694 original size:44 final size:44
Alignment explanation
Indices: 19601--20359 Score: 193
Period size: 44 Copynumber: 17.3 Consensus size: 44
19591 ATAGAGATCG
* * * *
19601 GATTATCAAAATTT-ATAGAAAGATTATCAAAATTTCATAGTGTT
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATG-T
* *
19645 G-TTATCAAAATTTCAAAGCGAGGTTATCAAAATTACATAATGT
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
* * * * * * * *
19688 GATTATCAGAATTTCATAGAGGGGTCAACAAAATTTTATAAAGA
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
* * *
19732 GGTTATCAAAATTTCATAA-AGAGGTTATCAAATTTTCAAAATGT
1 GATTATCAAAATTTCA-AAGAGAGGTTATCAAAATTTCATAATGT
* *
19776 GATTA-CAAAAATTTCATAGTGGTATTTCTGGGGAGGTTATCAAAATTTCATAATAT
1 GATTATC-AAAATTTCA-A-----A------GAGAGGTTATCAAAATTTCATAATGT
* * * * * * *
19832 GGTTA-CCAAA-TT--AGGA-AGGTTATTAAACTTTTATTATG-
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
* * **
19870 GAGTAATCAAAATTTC-AAG-GAGGATATCAAAA-TTCAGGGA-G-
1 GA-TTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCA-TAATGT
* *
19911 GA-TATCAAAATTTCATATGA-AGGTTATCAAAATTTCATAGT-T
1 GATTATCAAAATTTCA-AAGAGAGGTTATCAAAATTTCATAATGT
* * * * * *
19953 TAGTTTTCAAAATCTCACAAGAG-GGTTAACAAAATTTCATAGTAT
1 GA-TTATCAAAATTTCA-AAGAGAGGTTATCAAAATTTCATAATGT
* * * * * *
19998 GCA-GATCAAAATTTCATAGGGAGATTAACAAAATTTCATAATGA
1 G-ATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
** * * *
20042 GATTATCAAAAAATCATAGGGAGGTTATCAAAATTT-GT-A---
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
* * * ** *
20081 G-TTATCAAGATTTCATAAGA-AAGTTATCAAAATTTTATAGGGAG
1 GATTATCAAAATTTCA-AAGAGAGGTTATCAAAATTTCATAATG-T
* * * *
20125 GTTTATCAAAATTTTATAG-GAAGATTTATCAAAATTTCATATATAG-
1 GATTATCAAAATTTCAAAGAG-AG-GTTATCAAAATTTCATA-AT-GT
* * * * * * *
20171 G-TTATCACAATTTCATAGTGTGATTATCAAAATTTCAGAGTGT
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
* * * * *
20214 GATTA-CTAACAA-TTCATATG-GAGGTTTTTAAATTTTCATAACGT
1 GATTATC-AA-AATTTCA-AAGAGAGGTTATCAAAATTTCATAATGT
* * * * * * * *
20258 GGTTATCAATATATCATACG-TAGGTTATCAACATCTCATAGTGTT
1 GATTATCAAAATTTCA-AAGAGAGGTTATCAAAATTTCATAATG-T
* * ** * * * *
20303 GGTAATCAAAATTTCATTGGGAAGTTATCAAAATTTCATATTGA
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
20347 GATCT-TCAAAATT
1 GAT-TATCAAAATT
20360 CCTTAGGGAA
Statistics
Matches: 519, Mismatches: 137, Indels: 118
0.67 0.18 0.15
Matches are distributed among these distances:
38 26 0.05
39 34 0.07
40 5 0.01
41 21 0.04
42 19 0.04
43 24 0.05
44 271 0.52
45 67 0.13
46 18 0.03
48 1 0.00
49 1 0.00
51 1 0.00
54 2 0.00
55 3 0.01
56 26 0.05
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (44 bp):
GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTCATAATGT
Found at i:19905 original size:19 final size:19
Alignment explanation
Indices: 19875--19922 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
19865 TTATGGAGTA
19875 ATCAAAATTTCAAGGAGGAT
1 ATCAAAA-TTCAAGGAGGAT
*
19895 ATCAAAATTCAGGGAGGAT
1 ATCAAAATTCAAGGAGGAT
19914 ATCAAAATT
1 ATCAAAATT
19923 TCATATGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 20 0.74
20 7 0.26
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (19 bp):
ATCAAAATTCAAGGAGGAT
Found at i:19941 original size:22 final size:22
Alignment explanation
Indices: 19913--20473 Score: 169
Period size: 22 Copynumber: 25.7 Consensus size: 22
19903 TCAGGGAGGA
19913 TATCAAAATTTCATATGAAGGT
1 TATCAAAATTTCATATGAAGGT
**
19935 TATCAAAATTTCATAGTTTA-GT
1 TATCAAAATTTCATA-TGAAGGT
* * * * *
19957 TTTCAAAATCTCACAAGAGGGT
1 TATCAAAATTTCATATGAAGGT
* * **
19979 TAACAAAATTTCATA-GTATGCA
1 TATCAAAATTTCATATG-AAGGT
* * * *
20001 GATCAAAATTTCATAGGGAGAT
1 TATCAAAATTTCATATGAAGGT
* *
20023 TAACAAAATTTCATAATG-AGAT
1 TATCAAAATTTCAT-ATGAAGGT
** * *
20045 TATCAAAAAATCATAGGGAGGT
1 TATCAAAATTTCATATGAAGGT
*
20067 TATCAAAA--T--T-TGTA-GT
1 TATCAAAATTTCATATGAAGGT
* * *
20083 TATCAAGATTTCATAAGAAAGT
1 TATCAAAATTTCATATGAAGGT
* * *
20105 TATCAAAATTTTATAGGGAGGTT
1 TATCAAAATTTCATATGAAGG-T
* * *
20128 TATCAAAATTTTATAGGAAGATT
1 TATCAAAATTTCATATGAAG-GT
20151 TATCAAAATTTCATAT-ATAGGT
1 TATCAAAATTTCATATGA-AGGT
* * *
20173 TATCACAATTTCATAGTG-TGAT
1 TATCAAAATTTCATA-TGAAGGT
* * *
20195 TATCAAAATTTCAGAGTG-TGAT
1 TATCAAAATTTCATA-TGAAGGT
*
20217 TA-CTAACAA-TTCATATGGAGGT
1 TATC-AA-AATTTCATATGAAGGT
* * * * *
20239 TTTTAAATTTTCATAACG-TGGT
1 TATCAAAATTTCAT-ATGAAGGT
* * * *
20261 TATCAATATATCATACGTAGGT
1 TATCAAAATTTCATATGAAGGT
* * **
20283 TATCAACATCTCATAGTGTTGGT
1 TATCAAAATTTCATA-TGAAGGT
*
20306 AATCAAAATTTCAT-TGGGAA-GT
1 TATCAAAATTTCATAT--GAAGGT
*
20328 TATCAAAATTTCATATTG-AGAT
1 TATCAAAATTTCATA-TGAAGGT
* * *
20350 CT-TCAAAATTCCTTAGGGAA-GT
1 -TATCAAAATTTCATA-TGAAGGT
* * *
20372 TAACCAAATTTCATAAGAAGGT
1 TATCAAAATTTCATATGAAGGT
** **
20394 TAAAAAAATTT-ATAAAAAGGT
1 TATCAAAATTTCATATGAAGGT
* * * **
20415 TCTCGAAATTCCATA-GTATCGT
1 TATCAAAATTTCATATG-AAGGT
*
20437 TATTAAAATTTCATA-GTAAGGT
1 TATCAAAATTTCATATG-AAGGT
20459 TATCAAAATTTCATA
1 TATCAAAATTTCATA
20474 ATGGGATCAT
Statistics
Matches: 400, Mismatches: 103, Indels: 72
0.70 0.18 0.13
Matches are distributed among these distances:
16 9 0.02
17 2 0.00
18 2 0.00
20 2 0.00
21 33 0.08
22 285 0.71
23 66 0.17
24 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (22 bp):
TATCAAAATTTCATATGAAGGT
Found at i:20132 original size:23 final size:23
Alignment explanation
Indices: 20082--20161 Score: 99
Period size: 23 Copynumber: 3.5 Consensus size: 23
20072 AAATTTGTAG
* * * *
20082 TTATCAAGATTTCATAAGAA-AG
1 TTATCAAAATTTTATAGGAAGAT
* *
20104 TTATCAAAATTTTATAGGGAGGT
1 TTATCAAAATTTTATAGGAAGAT
20127 TTATCAAAATTTTATAGGAAGAT
1 TTATCAAAATTTTATAGGAAGAT
20150 TTATCAAAATTT
1 TTATCAAAATTT
20162 CATATATAGG
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 16 0.33
23 33 0.67
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.39
Consensus pattern (23 bp):
TTATCAAAATTTTATAGGAAGAT
Found at i:20176 original size:45 final size:44
Alignment explanation
Indices: 19875--20473 Score: 192
Period size: 44 Copynumber: 13.8 Consensus size: 44
19865 TTATGGAGTA
* * *
19875 ATCAAAATTTCA-AGGAGGA-TATCAAAA-TTC--AGGGAGGAT
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAGAGAGGTT
* * **
19914 ATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTTTA-GTT
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAG-AGAGGTT
* * * * * * *
19958 TTCAAAATCTCACAAGAGGGTTAACAAAATTTCATAGTATGCA-G--
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAG-A-G-AGGTT
* * *
20002 ATCAAAATTTCATAGGGAGATTAACAAAATTTCATA-ATGAGATT
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAGA-GAGGTT
** * * *
20046 ATCAAAAAATCATAGGGAGGTTATCAAAA-TT--T-G-TA-GTT
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAGAGAGGTT
* * * *
20084 ATCAAGATTTCATAAGAA-AGTTATCAAAATTTTATAGGGAGGTTT
1 ATCAAAATTTCATAGGAAGA-TTATCAAAATTTCATAGAGAGG-TT
* * *
20129 ATCAAAATTTTATAGGAAGATTTATCAAAATTTCATATATAGGTT
1 ATCAAAATTTCATAGGAAGA-TTATCAAAATTTCATAGAGAGGTT
* * * * * *
20174 ATCACAATTTCATAGTG-TGATTATCAAAATTTCAGAGTGTGATT
1 ATCAAAATTTCATAG-GAAGATTATCAAAATTTCATAGAGAGGTT
* * * * *
20218 A-CTAACAA-TTCATATGG-AGGTTTTTAAATTTTCATA-ACGTGGTT
1 ATC-AA-AATTTCATA-GGAAGATTATCAAAATTTCATAGA-GAGGTT
* * * * * * * * * *
20262 ATCAATATATCATACGTAGGTTATCAACATCTCATAGTGTTGGTA
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAGAG-AGGTT
* ** *
20307 ATCAAAATTTCATTGGGAAG-TTATCAAAATTTCATATTGAGATCT
1 ATCAAAATTTCA-TAGGAAGATTATCAAAATTTCATAGAGAGGT-T
* * * *
20352 -TCAAAATTCCTTAGGGAAG-TTAACCAAATTTCATA-AGAAGGTT
1 ATCAAAATTTCATA-GGAAGATTATCAAAATTTCATAGAG-AGGTT
** ** * * * * **
20395 AAAAAAATTT-ATAAAAAGGTTCTCGAAATTCCATAGTA-TCGTT
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAG-AGAGGTT
* * *
20438 ATTAAAATTTCATAGTAAGGTTATCAAAATTTCATA
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTCATA
20474 ATGGGATCAT
Statistics
Matches: 412, Mismatches: 108, Indels: 75
0.69 0.18 0.13
Matches are distributed among these distances:
38 24 0.06
39 15 0.04
40 4 0.01
41 11 0.03
42 10 0.02
43 34 0.08
44 218 0.53
45 70 0.17
46 26 0.06
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (44 bp):
ATCAAAATTTCATAGGAAGATTATCAAAATTTCATAGAGAGGTT
Found at i:20814 original size:27 final size:27
Alignment explanation
Indices: 20762--20814 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
20752 CAAAAGAATT
*
20762 ATATCAATAAAAATTAATATATATAAC
1 ATATCAATAAAAATTAATATAAATAAC
*
20789 ATATTAATAAAAAATTAAT-TAAATAA
1 ATATCAAT-AAAAATTAATATAAATAA
20815 AGTAATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (27 bp):
ATATCAATAAAAATTAATATAAATAAC
Found at i:20822 original size:13 final size:13
Alignment explanation
Indices: 20804--20828 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20794 AATAAAAAAT
20804 TAATTAAATAAAG
1 TAATTAAATAAAG
20817 TAATTAAATAAA
1 TAATTAAATAAA
20829 TAAATAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
TAATTAAATAAAG
Found at i:28151 original size:21 final size:21
Alignment explanation
Indices: 28125--28202 Score: 97
Period size: 21 Copynumber: 3.7 Consensus size: 21
28115 GGCTCAGAAA
28125 CAGGAATCTCAAATACTGGAT
1 CAGGAATCTCAAATACTGGAT
*
28146 CAGGAATCTCAAATACTGAAT
1 CAGGAATCTCAAATACTGGAT
* *
28167 CTGAAATCT-ATAATAC-GGAAT
1 CAGGAATCTCA-AATACTGG-AT
28188 CAGGAATCTCAAATA
1 CAGGAATCTCAAATA
28203 AAGGAGCTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.04
21 45 0.94
22 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (21 bp):
CAGGAATCTCAAATACTGGAT
Found at i:29629 original size:27 final size:27
Alignment explanation
Indices: 29581--29633 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
29571 CTGCATTTTA
** *
29581 ATTTTGTTGGGTAAGTCCAAGTTTCTG
1 ATTTTGTTGAATAACTCCAAGTTTCTG
*
29608 ATTTTGTTGAATAACTCTAAGTTTCT
1 ATTTTGTTGAATAACTCCAAGTTTCT
29634 AATGATTGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (27 bp):
ATTTTGTTGAATAACTCCAAGTTTCTG
Found at i:31325 original size:21 final size:21
Alignment explanation
Indices: 31301--31347 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
31291 CAGGAAACTG
31301 AAATACAGAATCTGAAATCTC
1 AAATACAGAATCTGAAATCTC
31322 AAATACAGAATCTGAAATCTC
1 AAATACAGAATCTGAAATCTC
31343 AAATA
1 AAATA
31348 AAGGAGCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (21 bp):
AAATACAGAATCTGAAATCTC
Found at i:35366 original size:18 final size:18
Alignment explanation
Indices: 35326--35367 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
35316 ATAGTGTAAC
* *
35326 AAAAACAAAATGAAAACA
1 AAAAACAAAATAAAAAAA
35344 AAAAACAAAA-AAAAAAA
1 AAAAACAAAATAAAAAAA
35361 AGAAAAC
1 A-AAAAC
35368 GTTGCCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.83, C:0.10, G:0.05, T:0.02
Consensus pattern (18 bp):
AAAAACAAAATAAAAAAA
Found at i:36394 original size:17 final size:20
Alignment explanation
Indices: 36357--36399 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
36347 GTTTTATTAT
36357 TAATATTATATATATATATA
1 TAATATTATATATATATATA
36377 TAATATT-TATTAATATATATA
1 TAATATTATA-T-ATATATATA
36398 TA
1 TA
36400 GTCGGTCGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.10
20 8 0.38
21 11 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TAATATTATATATATATATA
Found at i:40226 original size:23 final size:21
Alignment explanation
Indices: 40199--40243 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
40189 GCCAAAAAAA
40199 ATTATGATAATAATATAATATAT
1 ATTAT-ATAATAATATAA-ATAT
* *
40222 ATTATATATTAATCTAAATAT
1 ATTATATAATAATATAAATAT
40243 A
1 A
40244 AGAAATTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
ATTATATAATAATATAAATAT
Found at i:41894 original size:1 final size:1
Alignment explanation
Indices: 41856--41886 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
41846 CAGAATTATC
41856 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
41887 CCCTTTTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:42869 original size:4 final size:4
Alignment explanation
Indices: 42860--42885 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
42850 AGTTTGCTAT
42860 ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC AT
42886 TCACCCCACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:44983 original size:6 final size:6
Alignment explanation
Indices: 44972--45001 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
44962 CATAAAAAGC
44972 TAATTT TAATTT TAATTT TAATTT TAATTT
1 TAATTT TAATTT TAATTT TAATTT TAATTT
45002 CTTTGAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TAATTT
Found at i:49238 original size:50 final size:50
Alignment explanation
Indices: 49182--49281 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
49172 CATCAATCAT
49182 TAATGTGATAAAATTGAATTAAAGTAACATTTAAATTAAATTGAAGTAAC
1 TAATGTGATAAAATTGAATTAAAGTAACATTTAAATTAAATTGAAGTAAC
*
49232 TAATGTGATAGAATTGAATTAAAGTAACATTTAAATTAAATTGAAGTAAC
1 TAATGTGATAAAATTGAATTAAAGTAACATTTAAATTAAATTGAAGTAAC
49282 GTTTTCCATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.34
Consensus pattern (50 bp):
TAATGTGATAAAATTGAATTAAAGTAACATTTAAATTAAATTGAAGTAAC
Found at i:49246 original size:28 final size:22
Alignment explanation
Indices: 49192--49281 Score: 90
Period size: 22 Copynumber: 3.8 Consensus size: 22
49182 TAATGTGATA
* *
49192 AAATTGAATTAAAGTAACATTT
1 AAATTAAATTGAAGTAACATTT
49214 AAATTAAATTGAAGTAACTAATGTGAT
1 AAATTAAATTGAAGTAAC--AT-T--T
* *
49241 AGAATTGAATTAAAGTAACATTT
1 A-AATTAAATTGAAGTAACATTT
49264 AAATTAAATTGAAGTAAC
1 AAATTAAATTGAAGTAAC
49282 GTTTTCCATA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
22 31 0.55
23 2 0.04
24 2 0.04
25 2 0.04
26 2 0.04
27 2 0.04
28 15 0.27
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.33
Consensus pattern (22 bp):
AAATTAAATTGAAGTAACATTT
Found at i:51201 original size:334 final size:332
Alignment explanation
Indices: 49523--52398 Score: 3378
Period size: 333 Copynumber: 8.7 Consensus size: 332
49513 GCCAGGGTCC
* * *
49523 GTTAGTACACGATTTGGGCTAAAGTTTTGC-AAAAATTGACCCGAAACATTTCTCCTCAAATTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTC--A----
* * * * * * * *
49587 ATTTTTTGGCCATAATACTAAAAAAAAATATATAACTCAACGCCAAAAAGATTAAAGCG-CTTCT
60 A-TTTTTGGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAAGATTGAAG-GAGTTCT
* * ** * *
49651 CACACTTCAAATATTGTTTTTCCTA-TTTTTTCTGAATTAATTTCTAATTAAATC-AAACCAGAT
123 CACGCTTCTAATATCATTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGAT
* * * * *
49714 TGAGATGCTTGTAAAAAAAATTCCTTAAATCCAATGTGGCTGGGATTTCGTTAGATGAATATAGA
188 TGAGATGCTAGTAAAAAAAA-TCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGA
* * * * * * *
49779 TATTTTAATGAGTCTCGACACCAAAAATCATGCAAAACTGAGCTGGGGCTTCGGAACGCGTTTTT
252 TATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCT-GGAACGCGTTTTT
* *
49844 GGCCAAAAAACCGTGATG
316 AGTCAAAAAA-CGTGATG
* * * * *
49862 GTTAGTACACGACTTCGGCTAAAA-TTTAC-CATAA---A---G--A-ATTT-TCCTCAATTTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
* * * * * * * *
49915 GGCCAAAATACTCA-ATAAAAATATGTAATTCAACGCCATAAAGATTGAAAGG-CTTTTCACTCT
66 GGCCACAATACTCATA-AAAAATATATAATTCAACACAAAAAAGATTG-AAGGAGTTCTCACGCT
* *** * * * * ** *
49978 TTTAATATTGGTTGTCCTA-TTTTTTCCGAATTAAATTCAAATTAAATAGAAACATGATTCAGA-
129 TCTAATATCATTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGAT
* * * * ** *
50041 GCTCGTAAAACAAATCCTTGAA-TCCAATGTGGGTGAGATTTGGTTCGATGGATATAGATATATC
194 GCTAGTAAAAAAAATCCTT-AATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTC
* * * * * *
50105 AATGAGAACCTGGCGCCAAAAATCATACAAAACAGAGCCGGGGCCTCGTAACGCGTTTTTAGT-A
258 AATGAG-TCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCT-GGAACGCGTTTTTAGTCA
50169 AAAAATCGTGATG
321 AAAAA-CGTGATG
* * * *
50182 GTTAATACACGATTTCGGATAAAATTTTGCAAAAAATTGACCCGAAACATTTCTGCTCAAGTTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
** * * *
50247 GGCCACAATACAAATAAAAAATATATAAAT-AATAAAAAAAAGATTGAAGGAGTTCTCACGCTTC
66 GGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAAGATTGAAGGAGTTCTCACGCTTC
** * *
50311 TGCTATCATTTTTCTTATTTTTTTCCGAATTAATTTCCAATTAAATCGAAACCGGATTGAGATGC
131 TAATATCATTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATGC
* * * * *
50376 TAGTAAAAAAAATCTTTAATTCCAATGTGGGTGAGATTTCGTTTGATAAATATAGATATTACAAG
196 TAGTAAAAAAAATCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTCAAT
** * * * *
50441 GAGAATTGGCGACAAAAATCATGCAAAACTGAGCCGGGGCTCC-GGAAAGCGTTTTTGGAC-AAA
261 GAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCC-GGGC-CCTGGAACGCGTTTTTAGTCAAAA
50504 AACTGTGATG
324 AAC-GTGATG
*
50514 GTTAGTACACGATTTTGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
* * * * *
50579 GGCCACAATACTTATAAAAAATATATAACTCAACAAAAAAAAAACATTGAAGGAGTTCTCATGCT
66 GGCCACAATACTCATAAAAAATATATAATTCAAC--ACAAAAAAGATTGAAGGAGTTCTCACGCT
*
50644 TCTAATATCATTTTT-CT-TATTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGAT
129 TCTAATATCATTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGAT
* * * *
50707 GCTAGAAAAAAAAATCCTTAATTCCATTGTGGCTGAGATTTTGATCGATAAATATAGATATTTCA
194 GCTAGTAAAAAAAATCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTCA
** * * * *
50772 ATGAGTCTTGGTACCAAAATTCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAATCAAA
259 ATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAG-CCGGGCCCTGGAACGCGTTTTTAGTCAAA
*
50837 AATCGTGATG
323 AAACGTGATG
*
50847 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAAATTGACCCGAAACATTTCTATTCAATTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGC-AAAAAATTGACCCGAAACATTTCTACTCAATTTT
*
50912 TGGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAATATTGAAGGAGTTCTCACGCTT
65 TGGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAAGATTGAAGGAGTTCTCACGCTT
* * * *
50977 CTAATGTCATTTTTCGTATTTATTTTCCGAATTAATTTCTAAATAAATCGAAACGGGATTGAGAT
130 CTAATATCATTTTTCCTATTT-TTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGAT
* *
51042 GCTAGTAAAAAAAATCCTTAATTCCAATGTGGCTAAGATTTCGTTCGATAAATATAGAAATTTCA
194 GCTAGTAAAAAAAATCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTCA
* * * * *
51107 AGGAGTCTTGGCGCCAAAAATCATGTAAAACTGAGCCTGGCCCTAGAACGCGGTTTTAGTCAAAA
259 ATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCTGGAACGCGTTTTTAGTCAAAA
51172 AACGTGATG
324 AACGTGATG
* *
51181 GTTAGTACACGATTTCGGCTAAAATTTTGTAAAAAATTGACCCAAAACATTTCTACTCAATTTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
* * * * * * * * *
51246 TGCCACAATACTTACAAAAAATTTATAACTCAACACAAAAAATATTGTAGGAGTTTTAACGCTTC
66 GGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAAGATTGAAGGAGTTCTCACGCTTC
* *
51311 TAATATCAATTTTCCTATTTTTTTCCCGAATTAATTTCTAATAAAATCGAAACCGGATTGAGATG
131 TAATATCATTTTTCCTATTTTTTT-CCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATG
* * ** * *
51376 CTAGTAAAAAAAATCCTTAATTCCATTGTGGGTGAGATTTCGTTAAATAAATATAGACATTTCAG
195 CTAGTAAAAAAAATCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTCAA
* *
51441 TGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCTCGGGCCCCGGAACGCGTTTTTAGTCAAAA
260 TGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGC-CGGGCCCTGGAACGCGTTTTTAGTCAAAA
* * *
51506 ATCATG-TT
324 AACGTGATG
* * * * *
51514 G-TAATATATGATTTCGGCTAAAATTTTG-AAAAAATTGACCCGATACATTTCTGCTCAATTTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
* * * * *
51577 GGCCACAATACTCA-CAATAA-ATATAATTCAACACAAAAGATATTGAAGGAGTTGTCACGCTTC
66 GGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAAGATTGAAGGAGTTCTCACGCTTC
*
51640 TAATATCATTTTTCCTA--TTTTTCCGAATTAATTTCTAATTAAATCGAAACAGGATTGAGATGC
131 TAATATCATTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATGC
** * *
51703 TAGT-AAAAAAATCCTTAATTATAATGTGGCTGAGATTTTGTTCGATAAATATAGATACTTCAAT
196 TAGTAAAAAAAATCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTCAAT
** * * * * *
51767 GAGTCTTGGTACCAAAAATCTTGTAAAACTGAGCCGAGGCCCCGAAACGCGTTTTTAGTTAAAAA
261 GAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGCCCTGGAACGCGTTTTTAGTCAAAAA
**
51832 TTGTGATG
325 ACGTGATG
* * *
51840 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCAAAACATTTCTTCTAAATTTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
* *
51905 GGCCACAATACTCATAAAAAAATATATAATTCAACACAAGAAAGATTGAAGGAGTTCTCACGATT
66 GGCCACAATACTCAT-AAAAAATATATAATTCAACACAAAAAAGATTGAAGGAGTTCTCACGCTT
* * * *
51970 CTAATATCATTTTTCGTATTTTTTTCCGAATAAATTTCTAATTAAATCGAAACCAGATTGCGATG
130 CTAATATCATTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATG
* * *
52035 CTAGTAAAAAAAATCCTTAATTCCAATGTGGTTGAGATTTCTTTCGATAAATATAGAAATTTCAA
195 CTAGTAAAAAAAATCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTCAA
* * * *
52100 TGAGTCTTGGCGCCAAAAATCATGTAAAACTAAGTCGGGCCCTGAAACGCGTTTTTAGTCAAAAA
260 TGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCTGGAACGCGTTTTTAGTCAAAAA
*
52165 TCGTGATG
325 ACGTGATG
* ** * * * *
52173 GTTAATACACGATTTCCCCTAATATTTTTCAAAAAATTGACCCGAAACATTTTTGCTCAATTTTT
1 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
* * * *
52238 TGCCACAATACTCAT-AAAAATATATAATTGAACACAAAAATGATTGAAGGAGTTCTCATGCTTC
66 GGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAAGATTGAAGGAGTTCTCACGCTTC
* * * *
52302 TAAAATCATTTTTCGTATTTTTTTCTCTAATTAATTTCTAATTAAATTGAAACCGGATTGAGATG
131 TAATATCATTTTTCCTATTTTTTTC-CGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATG
* *
52367 TTAG-CAAAAAAATCCTTAATTCCAATGTGGCT
195 CTAGTAAAAAAAATCCTTAATTCCAATGTGGCT
52399 AAATTGAAAC
Statistics
Matches: 2188, Mismatches: 300, Indels: 106
0.84 0.12 0.04
Matches are distributed among these distances:
320 81 0.04
321 156 0.07
322 18 0.01
324 2 0.00
325 109 0.05
326 46 0.02
327 29 0.01
328 51 0.02
329 57 0.03
330 14 0.01
331 227 0.10
332 318 0.15
333 630 0.29
334 251 0.11
335 171 0.08
338 7 0.00
339 21 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (332 bp):
GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAACATTTCTACTCAATTTTT
GGCCACAATACTCATAAAAAATATATAATTCAACACAAAAAAGATTGAAGGAGTTCTCACGCTTC
TAATATCATTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACCGGATTGAGATGC
TAGTAAAAAAAATCCTTAATTCCAATGTGGCTGAGATTTCGTTCGATAAATATAGATATTTCAAT
GAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCTGGAACGCGTTTTTAGTCAAAAAA
CGTGATG
Found at i:52410 original size:54 final size:55
Alignment explanation
Indices: 52344--52455 Score: 199
Period size: 55 Copynumber: 2.1 Consensus size: 55
52334 AATTTCTAAT
* *
52344 TAAATTGAAACCGGATTGAGATGTTAG-CAAAAAAATCCTTAATTCCAATGTGGC
1 TAAATTGAAACCGGATTGAGATGCTAGTAAAAAAAATCCTTAATTCCAATGTGGC
52398 TAAATTGAAACCGGATTGAGATGCTAGTAAAAAAAATCCTTAATTCCAATGTGGC
1 TAAATTGAAACCGGATTGAGATGCTAGTAAAAAAAATCCTTAATTCCAATGTGGC
52453 TAA
1 TAA
52456 TATTTCTTTC
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
54 26 0.47
55 29 0.53
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (55 bp):
TAAATTGAAACCGGATTGAGATGCTAGTAAAAAAAATCCTTAATTCCAATGTGGC
Done.