Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010354.1 Corchorus capsularis cultivar CVL-1 contig10375, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140433

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1009--2146
331
3.4
330
88
1
1717
35
16
16
32
1.91
11343--11380
2
19.0
2
100
0
76
50
0
0
50
1.00
38438--38514
29
2.6
30
81
4
84
16
19
16
46
1.84
38676--38732
29
2.0
29
89
0
87
40
10
28
21
1.86
38676--38752
29
2.7
29
85
0
82
40
11
27
20
1.87
42747--42807
29
2.0
32
81
9
74
34
6
18
40
1.76
43426--43453
1
28.0
1
100
0
56
0
0
0
100
0.00
45136--45179
23
1.9
23
90
0
70
40
0
4
54
1.21
60750--60779
13
2.3
13
100
0
60
40
0
23
36
1.55
67325--67356
14
2.3
14
100
0
64
28
28
0
43
1.55
70102--70171
36
1.9
36
82
5
88
52
17
15
14
1.74
72251--72277
3
9.0
3
100
0
54
66
0
33
0
0.92
85130--85174
21
2.1
21
95
0
81
0
26
8
64
1.23
85296--85360
31
2.1
31
91
0
103
20
13
23
43
1.87
87140--87179
20
2.0
20
100
0
80
25
5
5
65
1.34
95866--96162
109
2.7
108
89
4
414
48
2
11
37
1.53
111143--111174
16
2.0
16
100
0
64
37
12
12
37
1.81
114588--114691
30
3.4
31
80
7
88
30
23
9
36
1.87
118195--118232
11
3.5
11
89
10
51
42
0
0
57
0.98
121408--121451
3
14.7
3
85
0
52
65
25
2
6
1.28
121408--121454
18
2.6
18
89
0
76
65
23
2
8
1.31
121408--121448
15
2.7
15
88
0
64
65
24
2
7
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124145--124193
26
1.9
26
87
4
73
20
10
12
57
1.64
129204--129236
15
2.2
15
94
0
57
39
15
12
33
1.84
132064--132134
4
17.8
4
94
0
124
73
1
25
0
0.92

Tables:   1

The End!