Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010355.1 Corchorus capsularis cultivar CVL-1 contig10376, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10478

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2509--4379
32
63.7
32
79
14
1611
30
15
22
31
1.95
2509--4431
58
32.8
57
76
16
1259
30
15
22
32
1.95
2508--4253
90
19.9
89
77
16
1276
29
15
22
31
1.95
3351--3426
24
3.1
24
83
7
89
27
17
22
32
1.96
3891--3963
29
2.5
29
97
0
137
38
17
13
30
1.89
4096--4138
14
3.1
14
86
0
59
30
13
13
41
1.84
4094--4226
26
4.8
26
76
17
110
30
12
20
36
1.90
3375--4413
90
11.6
90
78
13
958
30
15
21
31
1.95
4449--7944
332
10.5
331
80
6
3278
33
13
16
36
1.88
7861--8036
85
2.1
85
95
0
316
36
5
18
39
1.74
8397--10232
332
5.6
332
82
5
2094
32
15
17
34
1.92
8398--10318
655
2.9
653
85
4
2382
32
15
17
35
1.91
4557--10318
664
8.6
653
75
10
2482
32
14
16
35
1.89
10224--10403
85
2.1
86
93
1
308
36
4
19
39
1.72

Tables:   1

The End!