Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010358.1 Corchorus capsularis cultivar CVL-1 contig10379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76020

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1555--1585
2
15.0
2
93
6
53
48
3
0
48
1.17
2960--3045
36
2.5
35
86
3
120
22
12
11
53
1.70
3662--3705
11
4.0
11
88
8
54
43
0
2
54
1.12
5479--5504
13
2.0
13
100
0
52
30
0
7
61
1.24
6613--6663
22
2.4
22
86
3
68
49
7
11
31
1.68
6693--6751
21
2.8
21
75
14
59
37
8
13
40
1.75
6979--7048
23
3.2
23
76
13
67
51
10
7
31
1.62
7005--7048
20
2.1
21
88
12
65
50
11
6
31
1.65
7717--7766
24
2.0
25
92
3
84
34
6
20
40
1.77
7726--7775
24
2.2
24
89
7
77
46
2
18
34
1.60
8147--8176
16
1.9
15
93
6
51
53
0
13
33
1.40
9129--9167
3
13.0
3
83
0
51
0
30
33
35
1.58
17948--17972
1
25.0
1
100
0
50
100
0
0
0
0.00
21236--21384
74
2.0
74
100
0
298
40
22
13
24
1.89
27450--27528
37
2.1
37
92
0
131
34
12
13
39
1.83
29000--29080
40
2.0
40
86
9
112
45
16
7
30
1.74
31577--31608
1
32.0
1
93
0
55
96
0
3
0
0.20
32348--32391
14
3.1
14
81
12
63
63
20
4
11
1.44
59438--59478
18
2.2
18
91
4
64
85
2
12
0
0.70
59441--59484
5
9.0
5
82
12
56
81
2
15
0
0.78
75984--76019
2
17.5
2
94
5
63
50
2
0
47
1.15

Tables:   1

The End!