genome.fa.s10360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010360.1 Corchorus capsularis cultivar CVL-1 contig10381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161109

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1253	331	3.8	329	80	6	1301	35	16	14	33	1.89
1469--1499	2	15.0	2	93	6	53	48	3	0	48	1.17
3310--3354	21	2.1	21	87	0	63	11	33	28	26	1.91
5335--7611	333	6.8	329	77	8	1984	36	16	14	33	1.89
3896--7614	671	5.6	659	76	9	2910	35	16	14	32	1.90
8223--8257	11	3.2	11	91	0	61	0	2	17	80	0.84
9730--9774	14	3.2	14	80	0	54	42	15	22	20	1.89
11968--12035	21	3.2	21	68	15	68	25	13	32	29	1.93
11968--12050	42	2.0	42	100	0	166	26	14	33	25	1.94
11984--12050	21	3.2	21	68	16	66	28	16	32	22	1.95
15771--15808	19	2.0	20	89	5	60	34	10	0	55	1.34
16956--16982	1	27.0	1	100	0	54	100	0	0	0	0.00
22310--22345	17	2.1	17	94	5	63	63	8	5	22	1.43
22310--22346	18	2.1	18	94	0	65	64	8	5	21	1.40
25609--25642	9	3.7	9	84	7	50	26	0	0	73	0.83
25609--25648	19	2.1	19	100	0	80	30	0	0	70	0.88
35231--35279	25	2.0	25	100	0	98	61	12	12	14	1.58
41243--41272	2	15.0	2	100	0	60	50	0	0	50	1.00
41379--41415	19	1.9	19	94	0	65	48	21	2	27	1.63
56880--56958	31	2.6	30	96	4	149	53	1	7	37	1.38
59934--60010	38	2.1	38	92	2	129	16	20	14	48	1.81
66224--66324	29	3.4	28	76	16	89	41	29	12	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66755--66831	29	2.6	30	78	14	97	16	11	29	41	1.84
68237--68290	22	2.5	22	87	0	72	38	11	9	40	1.73
68302--68343	22	1.9	22	85	9	59	28	11	4	54	1.57
70123--70204	22	3.7	23	80	15	86	37	10	12	39	1.78
70166--70272	45	2.4	45	78	9	110	38	14	8	39	1.76
70147--70479	22	15.6	21	72	13	191	35	15	9	39	1.80
70431--70479	19	2.5	19	93	3	80	26	20	12	40	1.87
70560--70792	44	5.3	44	73	10	174	33	15	9	41	1.79
70560--70958	22	17.9	22	69	14	140	34	16	8	40	1.80
70991--71129	22	6.2	22	77	15	133	40	18	7	33	1.80
70999--71154	44	3.5	43	82	10	156	41	17	7	33	1.78
70998--71151	22	6.9	22	74	14	111	40	17	7	34	1.79
71316--71353	19	2.0	20	85	15	53	63	2	5	28	1.30
87914--87977	32	2.0	32	96	0	119	17	25	20	37	1.93
88443--88492	25	2.0	25	92	0	82	12	24	12	52	1.72
92411--92550	68	2.1	68	91	0	226	31	11	26	30	1.91
93611--99553	653	9.3	645	77	12	5384	19	17	22	40	1.91
95362--99553	648	6.5	649	76	13	3733	19	17	22	40	1.91
97978--98067	47	1.9	47	100	0	180	28	11	13	46	1.77
99552--99587	3	12.3	3	94	5	65	0	0	30	69	0.89
105331--105544	110	1.9	110	85	1	295	32	11	19	35	1.88
105920--106008	39	2.4	36	85	9	110	24	14	8	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111129--111158	3	10.0	3	100	0	60	0	33	0	66	0.92
117222--117273	3	17.3	3	95	0	95	32	0	1	65	1.04
122074--122229	30	5.0	30	68	20	122	19	16	32	32	1.94
122072--122268	96	2.1	96	92	1	333	18	17	34	29	1.94
123867--123913	23	2.0	23	100	0	94	53	0	29	17	1.44
126070--126098	2	14.5	2	100	0	58	51	0	0	48	1.00
140564--140619	27	2.0	30	89	10	91	32	12	26	28	1.93
140562--140625	28	2.2	30	83	10	89	32	15	26	25	1.95
143946--143978	13	2.6	13	90	4	50	54	3	18	24	1.57
145421--145570	75	2.0	76	97	1	284	36	21	18	24	1.95
151737--151768	16	2.0	16	93	0	55	46	0	6	46	1.27
151571--151909	187	1.8	183	94	2	606	28	16	12	43	1.83
155086--155111	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!