Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010363.1 Corchorus capsularis cultivar CVL-1 contig10384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39173
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Found at i:20874 original size:28 final size:28
Alignment explanation
Indices: 20834--20889 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
20824 CAAAGTGCTT
20834 GAACATATCAGGTGTTGGCAAGATGTGA
1 GAACATATCAGGTGTTGGCAAGATGTGA
20862 GAACATATCAGGTGTTGGCAAGATGTGA
1 GAACATATCAGGTGTTGGCAAGATGTGA
20890 TATAACCCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.25
Consensus pattern (28 bp):
GAACATATCAGGTGTTGGCAAGATGTGA
Found at i:23070 original size:31 final size:31
Alignment explanation
Indices: 23035--23108 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
23025 TGGTTAATTA
* * *
23035 AGTCCTTAATGTTGCAAAATTGACTCAAATC
1 AGTCCCTAAAGTTGCAAAATCGACTCAAATC
*
23066 AGTCCCTAAAGTTGCAAAATCGGCTCAAATC
1 AGTCCCTAAAGTTGCAAAATCGACTCAAATC
* *
23097 ACTCTCTAAAGT
1 AGTCCCTAAAGT
23109 CAATTTAAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (31 bp):
AGTCCCTAAAGTTGCAAAATCGACTCAAATC
Found at i:32778 original size:333 final size:333
Alignment explanation
Indices: 31146--34134 Score: 3785
Period size: 333 Copynumber: 9.0 Consensus size: 333
31136 CAACCATTGA
* * * * * *
31146 TTTTACAAGCATCTGAAT-TATGTTTCTATTTAATTAGAAATTAAATCGGAAAAAAAAGGAAAAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
* * * * *
31210 CGATATTAGAAGCGTGAAAAATCCTTCAATATTTTTGGCGTT-TATATATATATATATATATTGA
66 CGATATTAGAAGCGTG-AAAAGCCTTCAATCTTTTTGACGTTGAAT-TATATATAT-TTTA-TGA
*
31274 GTATTTTATCCAAAAATTGAGG-AAAATTTTTCGGGTCAAT-TTTTGCAAAATTTTAGCCAAAAT
127 GTATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAAT
* * ** * * * ** * *
31337 CGTGTATTAACCATCACGGTTTTTAACTAATAACGCATTTCGGGGTCCCGACTCAGTTTTACATG
192 CGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATG
* ** * * *
31402 ATTTTTGGCATGGAGAGTCTTTGAAATATCTATATTCATCTAATAAAATCCTAGCCACATTGCAT
257 ATTTTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCAT
**
31467 TTAAGGATTCAT
322 TTAAGGATTTGT
* * *
31479 TTTTATGAGCATTTGAATCTTTTTTT-GATTTAATTAGAAATTAATTCGAAAAAAATAGGAAAAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
* * *
31543 CGATATTAGAAACGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTA
66 CGATATTAGAAGCGTG-AAAAGCCTTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGTA
* * * * * *
31608 TTTTATCTAAAAATTGAGGAAAAAATTTTCGGGTAATTTTTTTTTTCCAAAATTTTAGTCAAAAT
130 TTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCA---TTATTTTGCAAAATTTTAGCCAAAAT
*
31673 CGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTT-TGGG-ATCCCGGCTCAGTTTTGCA
192 CGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTAT--CGGCTCAGTTTTGCA
* * *
31736 TGATTTTTTGCATCGAGACTCCTTGAAATATCTGTATTCATCTAATGAAATCTTAGCCACATTGC
255 TGATTTTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGC
31801 ATTTAAGGATTT-T
320 ATTTAAGGATTTGT
* * ** *
31814 TTTTACGAGCATCTGAATC-TTTTTTCGATTTGATTA-TAATCTAATTTAGAAAAAATATGAAAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAAT-TAATTCGGAAAAAATAGGAAAA
* * * * * *
31877 ACGATATTAAAATCATGAAAAGCCCATCAATATTTTTGACGTTGAA--AAATATATTTTATGAG-
65 ACGATATTAGAAGCGTGAAAAG-CCTTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGT
* ** * * ** *
31939 ATTATTGTGGTTAAAAGTTTA-GAAAATAACTTTCGGGTCATT-TTTTGCAAAATTATT-GCCGA
129 ATT-TTAT--CCAAAAATTGAGGAAAA-ATTTTTCGGGTCATTATTTTGCAAAATT-TTAGCCAA
* * * * *** * * *
32001 AATCGTGTAATAATCATTACGATTTTTGGCTAAAAACGCG-TTCCGGGGCCCAGTTCAATTTTGC
189 AATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGC
* * * * * * **
32065 ATGATTATTGGCGCCAAGACTCCTTGAAATATCAACATTCATCTAACCAAA---T--CC-CA--G
254 ATGATTTTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTG
32122 CCA-TT----A----T
319 -CATTTAAGGATTTGT
* * * * *
32129 TTTTACAAGCATCTGAATCATGTTTT-GATTTGATT-GTAAATTAATTCAGAAAAAATAGGAAAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAG-AAATTAATTCGGAAAAAATAGGAAAA
* * *
32192 ACAGA-ATTAGAAGCGTGAAAAGGCCTTCAGA-CTTTTTGGCGTTGAGTTATAAATATTTTATGA
65 AC-GATATTAGAAGCGTGAAAA-GCCTTCA-ATCTTTTTGACGTTGAATTATATATATTTTATGA
* ** * *
32255 GTATTTTATCCAAAAATTGAGGAAAAACTTTTCTTGTTATT-TTTTGCAAAATTTTAGCTAAAAT
127 GTATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAAT
* * *
32319 CGTGTACTAAACATCACGATTTTTGGCTAAAAACGCATTTCAGGGTATCGGCTCAATTTTGCATG
192 CGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATG
* * * *
32384 ATTTTTTGCACCGAGACACCTTTAAATATCTATGTTCATCTAATAAAATCTTAGTCACATTGCAT
257 ATTTTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCAT
*
32449 TTAAGGATTTAT
322 TTAAGGATTTGT
* *
32461 TTTTACGCGCATCTGAATCTTTTTTTCAATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAA-AAATAGGAAAA
*
32526 ACGATATTAGAAGCGTGAAAAGCCTTTCAATCTTTTTGGCGTTGAATTATATATA-TTTATGAGT
65 ACGATATTAGAAGCGTGAAAAGCC-TTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGT
* *
32590 ATTTTATCCAAAAATTGAGGAAAAAATTTTCGGGTCAGT-TTTTGCAAAATTTTAGCCAAAATCG
129 ATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCG
* ** * *
32654 TGTACTTTA-CATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGATTCAGTTTTGGATTA
194 TGTAC-TAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATGA
** *
32718 TTTTTTGCATTGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTTGCCACATTGCATT
258 TTTTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATT
32783 TAAGGATTTGT
323 TAAGGATTTGT
*
32794 TTTTACGAGCATCTGAATC-TTTTTTCGATTTAATTAGAAATTAATTCGGAGAAAATAGGAAAAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
* *
32858 CGATATTAGAAGCGTGAAAAGCCTTCAATCTTTTTGACGTTAAATTATATATATTTTATGATTAT
66 CGATATTAGAAGCGTGAAAAGCCTTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGTAT
32923 TTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTG
131 TTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTG
* * ** *
32988 TACTAACCATCACGATTTTTGGCTAAAAACGCGTTACGGGGTCCCGGCTCAGTTTTGCATGAATT
196 TACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATGATTT
* * * *
33053 TTGGCACCGAAACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCGCAATGCATTTAA
261 TTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAA
33118 GGATTTGT
326 GGATTTGT
* * *
33126 TTTTACTAAGCATCTGAATCTCTTTTT-GATTTAATTAGAAATTAGTTCGGAAAAAATAGGAAAA
1 TTTTAC-GAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAA
* *
33190 ACGATATTAGAAGCGTGAAAAACCCTTCAATTTTTTTGACGTTGAATTATATATATTTTATGAGT
65 ACGATATTAGAAGCGTG-AAAAGCCTTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGT
* *
33255 A-TTTACTCCAAAAATTGAGGAAAAATTTTTCGGGACATTATTTTGCAAAACTTTAGCCAAAATC
129 ATTTTA-TCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATC
* *
33319 GTGTACT-ACCATCACGATTTTTGGCTAAAAACGCGTTTCGGGGTCTCGGCTCAGTTTTGCATGA
193 GTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATGA
* *
33383 TTTTTTGCACCGAGACTCCTTGAAATATTTATATTCATCTAATAAAATCTTAGTCACATTGCATT
258 TTTTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATT
33448 TAAGGATTTGT
323 TAAGGATTTGT
33459 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTA-AAATTAATTCGGAAATAAATAGG-AAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAA-AAATAGGAAAA
* * *
33522 ACAATATTAGAAGCGTAAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGAG-
65 ACGATATTAGAAGCGTGAAAAG-CCTTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGT
* * *
33586 ATTTTATCCAAAAATGGAGGAAAAATTTTTCGGGTCATT-TATTGCAAAGTTTTAGCCAAAATCG
129 ATTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCG
* * * ** * *
33650 TGTACTAAACATCACGATTATTGGCTAAAAACGCGTTTCGGGGTATCGATTCAGTTTTGAATTAT
194 TGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATGAT
* * * *
33715 TTTTTGCACTGCGACTCCTTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTG
259 TTTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTT
33780 AAGGATTTGT
324 AAGGATTTGT
* *
33790 TTTTACGAGCATGTGAATC-TTTTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAA
1 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
* * * *
33854 CAATATTAGAAGTGTGAAAAACACTTCAATATTTTTGACGTTGAATTATATATATTTTATGAGTA
66 CGATATTAGAAGCGTGAAAAGC-CTTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGTA
*
33919 TTTTCTCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGT
130 TTTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGT
* ** * *
33984 GTACTAACCATCACGATTTTTGGCTAAAAACGTGTTTCAGGGTCCCGGCTCAGTTTAGTATGATT
195 GTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATGATT
* *
34049 TTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTA
260 TTTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTA
34114 AGGATTTGT
325 AGGATTTGT
*
34123 TTTTACAAGCAT
1 TTTTACGAGCAT
34135 GAAAGGCCCA
Statistics
Matches: 2323, Mismatches: 260, Indels: 146
0.85 0.10 0.05
Matches are distributed among these distances:
314 2 0.00
315 148 0.06
316 75 0.03
317 17 0.01
318 4 0.00
319 1 0.00
321 1 0.00
322 5 0.00
323 4 0.00
324 5 0.00
325 2 0.00
327 1 0.00
328 1 0.00
330 135 0.06
331 408 0.18
332 359 0.15
333 721 0.31
334 195 0.08
335 102 0.04
336 137 0.06
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (333 bp):
TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
CGATATTAGAAGCGTGAAAAGCCTTCAATCTTTTTGACGTTGAATTATATATATTTTATGAGTAT
TTTATCCAAAAATTGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTG
TACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGTATCGGCTCAGTTTTGCATGATTT
TTTGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAA
GGATTTGT
Found at i:33089 original size:665 final size:664
Alignment explanation
Indices: 30656--34134 Score: 4088
Period size: 665 Copynumber: 5.3 Consensus size: 664
30646 CTATTTTATT
* * *
30656 ATTTTTCGAGTCATTTTTTTGCAAAATTTTAGTCAAAATCGTGTA-TTAACCATCACGATTTTTG
1 ATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTACTT-ACCATCACGATTTTTG
* * * *
30720 GCTAAAAACGCGTTTCGGGGTCCCGGTTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTAAA
65 GCTAAAAACGCGTTTCAGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGAA
* *
30785 ATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGAATTT-TTTTTACGAGCATC
130 ATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACAAGCATC
* ** *
30849 TAAATC-TTTTTTCGATTTAATTAG-AATCTAATTTAGAAAAAATATGAAAAACGATATTCA-AA
195 TGAATCATTTTTTCGATTTAATTAGAAAT-TAATTCGGAAAAAATAGGAAAAACGATATT-AGAA
* * * * * * * ** *
30911 GCATGAAAATCCCATT-AATCTTTTTGGAGCTGAATTATATATTTTTTAAGAGTATTATGGCTAA
258 GCGTGAAAA-GCC-TTCAATCTTTTTGGCGTTGAATTATATATATTTTATGA-TATTTTATCCAA
* * * * * ** * *
30975 AAATTTA-GAAAATATTTTTCGGGTCAATTTTTGCAAAATTATAGCCGAAATTGTAAAATAATCA
320 AAATTGAGGAAAA-ATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAACA
* * * ** * * * * * *
31039 TCACGATTTTTTGGATAAAAACGCATTCCGGGG-CCCGGATAAATTTTGTATGATTTTTGGCACT
384 TCACGA-TTTTTGGCTAAAAACGCGTTTCGGGGTATCGGCTCAGTTTTGCATGATTTTTTGCACC
* ** *
31103 GAGACTCCTTGAAATATC---A---ATCTAACCAAA--TT--CCA-A--CCA-TT---GA-----
448 GAGACTCCTTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGT
* * * * * *
31146 TTTTACAAGCATCTGAAT-TATGTTTCTATTTAATTAGAAATTAAATCGGAAAAAAAAGGAAAAA
513 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
* * *
31210 CGATATTAGAAGCGTGAAAAATCCTTCAATATTTTTGGCGTT-TATATATATATATATATATTGA
578 CGATATTAGAAGCGTGAAAAA-CCTTCAATATTTTTGACGTTGAAT-TATATATAT-TTTA-TGA
31274 GTATTTTATCCAAAAATTGAGG-AAA
639 GTATTTTATCCAAAAATTGAGGAAAA
* * *
31299 ATTTTTCGGGTCAAT-TTTTGCAAAATTTTAGCCAAAATCGTGTA-TTAACCATCACGGTTTTTA
1 ATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTACTT-ACCATCACGATTTTTG
* * * * * * * * ** * *
31362 ACTAATAACGCATTTCGGGGTCCCGACTCAGTTTTACATGATTTTTGGCATGGAGAGTCTTTGAA
65 GCTAAAAACGCGTTTCAGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGAA
* ** ** *
31427 ATATCTATATTCATCTAATAAAATCCTAGCCACATTGCATTTAAGGATTCATTTTTATGAGCATT
130 ATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACAAGCATC
* * *
31492 TGAATC-TTTTTTTGATTTAATTAGAAATTAATTCGAAAAAAATAGGAAAAACGATATTAGAAAC
195 TGAATCATTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATATTAGAAGC
* *
31556 GTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTTATCTAAAAA
260 GTG-AAAAGCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGA-TATTTTATCCAAAAA
* * * * *
31621 TTGAGGAAAAAATTTTCGGGTAATTTTTTTTTTCCAAAATTTTAGTCAAAATCGTGTACTAACCA
323 TTGAGGAAAAATTTTTCGGGTCA----TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAACA
* * ** *
31686 TCACGATTTTTGGCTAAAAACGCGTTTTGGGATCCCGGCTCAGTTTTGCATGATTTTTTGCATCG
384 TCACGATTTTTGGCTAAAAACGCGTTTCGGGGTATCGGCTCAGTTTTGCATGATTTTTTGCACCG
* * *
31751 AGACTCCTTGAAATATCTGTATTCATCTAATGAAATCTTAGCCACATTGCATTTAAGGATTT-TT
449 AGACTCCTTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTT
* * ** *
31815 TTTACGAGCATCTGAATC-TTTTTTCGATTTGATTA-TAATCTAATTTAGAAAAAATATGAAAAA
514 TTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAAT-TAATTCGGAAAAAATAGGAAAAA
* * * * * *
31878 CGATATTAAAATCATGAAAAGCCCATCAATATTTTTGACGTTGAA--AAATATATTTTATGAG-A
578 CGATATTAGAAGCGTGAAAA-ACCTTCAATATTTTTGACGTTGAATTATATATATTTTATGAGTA
* ** * *
31940 TTATTGTGGTTAAAAGTTTA-GAAAA
642 TT-TTAT--CCAAAAATTGAGGAAAA
** * * * * *
31965 TAACTTTCGGGTCATT-TTTTGCAAAATTATT-GCCGAAATCGTGTAATAATCATTACGATTTTT
1 -ATTTTTCGGGTCATTATTTTGCAAAATT-TTAGCCAAAATCGTGTACTTACCATCACGATTTTT
* * * * * * * * * *
32028 GGCTAAAAACGCG-TTCCGGGGCCCAGTTCAATTTTGCATGATTATTGGCGCCAAGACTCCTTGA
64 GGCTAAAAACGCGTTTCAGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGA
* * **
32092 AATATCAACATTCATCTAACCAAA---T--CC-CA--GCCA-TT----A----TTTTTACAAGCA
129 AATATCTATATTCATCTAATAAAATCTTAGCCACATTG-CATTTAAGGATTTGTTTTTACAAGCA
* * *
32140 TCTGAATCATGTTTT-GATTTGATT-GTAAATTAATTCAGAAAAAATAGGAAAAACAGA-ATTAG
193 TCTGAATCATTTTTTCGATTTAATTAG-AAATTAATTCGGAAAAAATAGGAAAAAC-GATATTAG
* *
32202 AAGCGTGAAAAGGCCTTCAGA-CTTTTTGGCGTTGAGTTATAAATATTTTATGAGTATTTTATCC
256 AAGCGTGAAAA-GCCTTCA-ATCTTTTTGGCGTTGAATTATATATATTTTATGA-TATTTTATCC
* ** * *
32266 AAAAATTGAGGAAAAACTTTTCTTGTTATTTTTTGCAAAATTTTAGCTAAAATCGTGTACTAAAC
318 AAAAATTGAGGAAAAATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAAC
* * *
32331 ATCACGATTTTTGGCTAAAAACGCATTTCAGGGTATCGGCTCAATTTTGCATGATTTTTTGCACC
383 ATCACGATTTTTGGCTAAAAACGCGTTTCGGGGTATCGGCTCAGTTTTGCATGATTTTTTGCACC
* * * * *
32396 GAGACACCTTTAAATATCTATGTTCATCTAATAAAATCTTAGTCACATTGCATTTAAGGATTTAT
448 GAGACTCCTTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGT
* *
32461 TTTTACGCGCATCTGAATCTTTTTTTCAATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAA
513 TTTTACGAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAA-AAATAGGAAAA
* * *
32526 ACGATATTAGAAGCGTGAAAAGCCTTTCAATCTTTTTGGCGTTGAATTATATATA-TTTATGAGT
577 ACGATATTAGAAGCGTGAAAAACC-TTCAATATTTTTGACGTTGAATTATATATATTTTATGAGT
32590 ATTTTATCCAAAAATTGAGGAAAA
641 ATTTTATCCAAAAATTGAGGAAAA
* *
32614 AATTTTCGGGTCAGT-TTTTGCAAAATTTTAGCCAAAATCGTGTACTTTA-CATCACGATTTTTG
1 ATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTAC-TTACCATCACGATTTTTG
* ** * * **
32677 GCTAAAAACGCGTTTCAGGGTATCGATTCAGTTTTGGATTATTTTTTGCATTGAGACTCCTTGAA
65 GCTAAAAACGCGTTTCAGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGAA
* *
32742 ATATCTATATTCATCTAATAAAATCTTTGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATC
130 ATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACAAGCATC
*
32807 TGAATC-TTTTTTCGATTTAATTAGAAATTAATTCGGAGAAAATAGGAAAAACGATATTAGAAGC
195 TGAATCATTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATATTAGAAGC
* *
32871 GTGAAAAGCCTTCAATCTTTTTGACGTTAAATTATATATATTTTATGATTATTTTATCCAAAAAT
260 GTGAAAAGCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGA-TATTTTATCCAAAAAT
*
32936 TGAGGAAAAATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCAC
324 TGAGGAAAAATTTTTCGGGTCATT-TTTTGCAAAATTTTAGCCAAAATCGTGTACTAAACATCAC
* ** * * *
33001 GATTTTTGGCTAAAAACGCGTTACGGGGTCCCGGCTCAGTTTTGCATGAATTTTGGCACCGAAAC
388 GATTTTTGGCTAAAAACGCGTTTCGGGGTATCGGCTCAGTTTTGCATGATTTTTTGCACCGAGAC
* * *
33066 TCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCGCAATGCATTTAAGGATTTGTTTTTA
453 TCCTTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTA
* * *
33131 CTAAGCATCTGAATCTCTTTTT-GATTTAATTAGAAATTAGTTCGGAAAAAATAGGAAAAACGAT
518 C-GAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGAT
*
33195 ATTAGAAGCGTGAAAAACCCTTCAATTTTTTTGACGTTGAATTATATATATTTTATGAGTA-TTT
582 ATTAGAAGCGTGAAAAA-CCTTCAATATTTTTGACGTTGAATTATATATATTTTATGAGTATTTT
33259 ACTCCAAAAATTGAGGAAAA
646 A-TCCAAAAATTGAGGAAAA
* *
33279 ATTTTTCGGGACATTATTTTGCAAAACTTTAGCCAAAATCGTGTAC-TACCATCACGATTTTTGG
1 ATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTACTTACCATCACGATTTTTGG
*
33343 CTAAAAACGCGTTTCGGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGAAA
66 CTAAAAACGCGTTTCAGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGAAA
* * *
33408 TATTTATATTCATCTAATAAAATCTTAGTCACATTGCATTTAAGGATTTGTTTTTACGAGCATCT
131 TATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACAAGCATCT
* *
33473 GAATCTTTTTTTCGATTTAATTA-AAATTAATTCGGAAATAAATAGG-AAAACAATATTAGAAGC
196 GAATCATTTTTTCGATTTAATTAGAAATTAATTCGGAAA-AAATAGGAAAAACGATATTAGAAGC
* *
33536 GTAAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGATTTTATCCAAAAAT
260 GTGAAAAG-CCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGATATTTTATCCAAAAAT
* * *
33601 GGAGGAAAAATTTTTCGGGTCATTTATTGCAAAGTTTTAGCCAAAATCGTGTACTAAACATCACG
324 TGAGGAAAAATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAACATCACG
* ** * * * *
33666 ATTATTGGCTAAAAACGCGTTTCGGGGTATCGATTCAGTTTTGAATTATTTTTTGCACTGCGACT
389 ATTTTTGGCTAAAAACGCGTTTCGGGGTATCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACT
*
33731 CCTTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTGAAGGATTTGTTTTTAC
454 CCTTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTAC
* * *
33796 GAGCATGTGAATC-TTTTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACAATAT
519 GAGCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATAT
* *
33860 TAGAAGTGTGAAAAACACTTCAATATTTTTGACGTTGAATTATATATATTTTATGAGTATTTTCT
584 TAGAAGCGTGAAAAAC-CTTCAATATTTTTGACGTTGAATTATATATATTTTATGAGTATTTTAT
33925 CCAAAAATTGAGGAAAA
648 CCAAAAATTGAGGAAAA
*
33942 ATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGATTTTTGG
1 ATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTACTTACCATCACGATTTTTGG
* * * * *
34007 CTAAAAACGTGTTTCAGGGTCCCGGCTCAGTTTAGTATGATTTTTGGCACCGAGACTCCTTGAAA
66 CTAAAAACGCGTTTCAGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGAAA
*
34072 TATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACAAGCAT
131 TATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACAAGCAT
34135 GAAAGGCCCA
Statistics
Matches: 2437, Mismatches: 303, Indels: 171
0.84 0.10 0.06
Matches are distributed among these distances:
642 148 0.06
643 139 0.06
644 12 0.00
646 168 0.07
647 97 0.04
648 96 0.04
649 117 0.05
650 144 0.06
651 17 0.01
652 1 0.00
653 9 0.00
654 3 0.00
655 4 0.00
656 2 0.00
657 6 0.00
658 4 0.00
659 2 0.00
660 4 0.00
661 5 0.00
662 6 0.00
663 174 0.07
664 442 0.18
665 506 0.21
666 183 0.08
667 61 0.03
668 86 0.04
669 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (664 bp):
ATTTTTCGGGTCATTATTTTGCAAAATTTTAGCCAAAATCGTGTACTTACCATCACGATTTTTGG
CTAAAAACGCGTTTCAGGGTCTCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCCTTGAAA
TATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACAAGCATCT
GAATCATTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATATTAGAAGCG
TGAAAAGCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTATGATATTTTATCCAAAAATTG
AGGAAAAATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAACATCACGAT
TTTTGGCTAAAAACGCGTTTCGGGGTATCGGCTCAGTTTTGCATGATTTTTTGCACCGAGACTCC
TTAAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGA
GCATCTGAATCTTTTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATATTA
GAAGCGTGAAAAACCTTCAATATTTTTGACGTTGAATTATATATATTTTATGAGTATTTTATCCA
AAAATTGAGGAAAA
Found at i:34899 original size:11 final size:11
Alignment explanation
Indices: 34885--34909 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
34875 TTCGGGTCAT
34885 TTTTAGCAAAA
1 TTTTAGCAAAA
34896 TTTTAGCAAAA
1 TTTTAGCAAAA
34907 TTT
1 TTT
34910 CGGGTCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTAGCAAAA
Found at i:34951 original size:324 final size:329
Alignment explanation
Indices: 34599--35820 Score: 1419
Period size: 335 Copynumber: 3.7 Consensus size: 329
34589 ATCACGGTTT
* * * * * *
34599 TTTTTGGCAAAAAACGCGTTTCGGGGTCCCGGCTCAATTTTGCATGATATTTGGGATCGCGACTT
1 TTTTTGGCTAAAAACGCGTTTCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCATCGAGACTC
* * * *
34664 GTTGAAAAATGTGTATTCACCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACG
66 CTTGAAAAATATATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACG
* * * * *
34729 AGCATTTGAAT-TTTTTTATTTAATCAGAAATTAATTCGTAAATAAATAGGAAAAATGATATTAT
131 AGCATCTGAATCTTTTTTATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATTAG
* * * ** * * * *
34793 AATTGTGAAAAG-CATTCAATCATTTTCGTATTGAATTATATATATTTTATGAGTATTTTATCGA
196 AAGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATCCA
* ***
34857 AAAATAAAAGAAAAATTTTTCGGGTCATTTTTAGCAAAATTTTA-GCAAAAT-T-T-CGGGTCAT
261 AAAAT-AAAGAAAAATTTTTCGGGTCATTTTTAGCAAAATTTTACCCAAAATCTATACGAACCAT
*
34918 CACGG
325 CACGA
* * * * *
34923 TTTTTGGCTAAAAAGGCGTTTTGGGGTCCCGGCTTAGTTTTGCATGATTTTTGGCTTGGAGACTC
1 TTTTTGGCTAAAAACGCGTTTCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCATCGAGACTC
34988 CTT-AAAATATATATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTAC
66 CTTGAAAA-ATATATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTAC
35052 GAGCATCTGAATCTTTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATAT
130 GAGCATCTGAATCTTTTTT--ATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATAT
35117 TAGAAGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTAT
193 TAGAAGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTAT
* * * * * * *
35182 CTAAAAATTGAGGAAAAATTTTTCGGGTCATTTTTTTTGGAAATTTTTACCCAAAATCCTATACT
258 CCAAAAA-TAAAGAAAAATTTTTCGGGTCA--TTTTTAGCAAAATTTTACCCAAAAT-CTATACG
35247 AACCATCACGA
319 AACCATCACGA
* * * *
35258 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGTCTC
1 TTTTTGGCTAAAAACGCGTTTCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCATCGAGACTC
* ** * ** *
35323 CTTGAAATATCCATATTCATCTAATAAAATCTTAGCCACAATGTTTTTAAGGATTTGTTTTTACA
66 CTTGAAAAATATATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACG
* * *
35388 AGCATGTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAT-AATAGGAAAAACAATATT
131 AGCATCTGAATCT-TTTT-TATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
* *
35452 AGAAGCGTGAAAAGCCCTTCAAT-TTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
194 AGAAGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
* * * * * * * *
35516 CAAAAATTAAGGAAAATTTTTCGGGTCATTCTTTTTGGAAATTTTTAGCCAAAATCGTGTACTAA
259 CAAAAATAAAGAAAAATTTTTCGGGTCA-T-TTTTAGCAAAATTTTACCCAAAATC-TATACGAA
*
35581 CCATCTCGA
321 CCATCACGA
* * *
35590 TTTTTGGCTAAAAACAG-GTTTCGGGGT-CCGACTCAGTTTTGCATGATTTTTGGCACCAAGACT
1 TTTTTGGCTAAAAAC-GCGTTTCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCATCGAGACT
* * * * * *
35653 CCTTGAAATATCTATAATCATCTAATAAAATCTTAGCCATAATGCATTTAAGG-TTTGATTTTAC
65 CCTTGAAAAATATATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTAC
* ** * * * *
35717 AATAATCTAAATCTCTTTTCGATTTAGTTAGAAATTAATTCGGGAA-AAATAGGAAAAAC-AGTA
130 GAGCATCTGAATCT-TTTT-TATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGA-TA
* * * *
35780 TTAGAAGCGTGAAAATCCCTTCAATCTTTTTGACGTTGAAT
192 TTAGAAGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAAT
35821 CTTAGCCACA
Statistics
Matches: 791, Mismatches: 85, Indels: 37
0.87 0.09 0.04
Matches are distributed among these distances:
323 4 0.01
324 120 0.15
325 6 0.01
327 54 0.07
328 67 0.08
329 2 0.00
330 102 0.13
331 105 0.13
332 82 0.10
333 47 0.06
334 39 0.05
335 156 0.20
336 7 0.01
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (329 bp):
TTTTTGGCTAAAAACGCGTTTCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCATCGAGACTC
CTTGAAAAATATATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACG
AGCATCTGAATCTTTTTTATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATTAG
AAGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATCCA
AAAATAAAGAAAAATTTTTCGGGTCATTTTTAGCAAAATTTTACCCAAAATCTATACGAACCATC
ACGA
Found at i:35341 original size:335 final size:332
Alignment explanation
Indices: 34599--37236 Score: 1550
Period size: 332 Copynumber: 7.7 Consensus size: 332
34589 ATCACGGTTT
* * * * * * * * *
34599 TTTTTGGCAAAAAACGCGTTTCGGGGTCCCGGCTCAATTTTGCATGATATTTGGGATCGCGACTT
1 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGACTC
* * * * * * *
34664 GTTGAAAAATGTGTATTCACCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACG
66 CTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACA
* * * * *
34729 AGCATTTGAAT-T-TTTT-TATTTAATCAGAAATTAATTCGTAAATAAATAGGAAAAATGATATT
131 AGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
* ** * * ** * * *
34791 ATAATTGTGAAAAG-CATTCAATCATTTTCGTATTGAATTATATATATTTTATGAGTATTTTATC
196 AGAAGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
* * * * * * * ****
34855 GAAAAATAAAAGAAAAATTTTTCGGGTCA--TTTTTAGCAAAATTTTAGCAAAAT-TT-CGGGTC
261 CAAAAATTAAGGAAAAATTTTTCGGGTCATTTTTTTTGGAAATTTTTACCAAAATCTTACTAACC
*
34916 ATCACGG
326 ATCACGA
** * * * ***
34923 TTTTTGGCTAAAAAGGCGTTTTGGGGTCCCGGCTTAGTTTTGCATGATTTTTGGCTTGGAGACTC
1 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGACTC
* * * *
34988 CTTAAAATATATATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACG
66 CTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACA
*
35053 AGCATCTGAATCTTTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
131 AGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
*
35118 AGAAGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
196 AGAAGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
* *
35183 TAAAAATTGAGGAAAAATTTTTCGGGTCATTTTTTTTGGAAATTTTTACCCAAAATCCTATACTA
261 CAAAAATTAAGGAAAAATTTTTCGGGTCATTTTTTTTGGAAATTTTTA-CCAAAAT-CT-TACTA
35248 ACCATCACGA
323 ACCATCACGA
*
35258 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGTCTC
1 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGACTC
* **
35323 CTTGAAATATCCATATTCATCTAATAAAATCTTAGCCACAATGTTTTTAAGGATTTGTTTTTACA
66 CTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACA
* *
35388 AGCATGTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAT-AATAGGAAAAACAATATT
131 AGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
*
35452 AGAAGCGTGAAAAGCCCTTCAAT-TTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
196 AGAAGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
*
35516 CAAAAATTAAGG-AAAATTTTTCGGGTCATTCTTTTTGGAAATTTTTAGCCAAAATCGTGTACTA
261 CAAAAATTAAGGAAAAATTTTTCGGGTCATTTTTTTTGGAAATTTTTA-CCAAAATC-T-TACTA
*
35580 ACCATCTCGA
323 ACCATCACGA
* *
35590 TTTTTGGCTAAAAACAGGTTTCGGGGT-CCGACTCAGTTTTGCATGATTTTTGGCACCAAGACTC
1 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGACTC
* * *
35654 CTTGAAATATCTATAATCATCTAATAAAATCTTAGCCATAATGCATTTAAGG-TTTGATTTTACA
66 CTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACA
** * * *
35718 ATAATCTAAATCTCTTTTCGATTTAGTTAGAAATTAATTCGGGAA-AAATAGGAAAAAC-AGTAT
131 AGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGA-TAT
* * * * *
35781 TAGAAGCGTGAAAATCCCTTCAATCTTTTTGACGTTGAATCT-TAGCCACATTGCAT-TTAAGAA
195 TAGAAGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAAT-TAT-G-TATATT--ATATT-AG--
* * * * ** **** ** * ** * ***
35844 TTTGTTTTTACGAGCATCTAA--ATCTTTTTTTCGATTTAATCAGAAATTAATTCGGAAATAAAT
252 TAT-TTTATCCAAAAAT-TAAGGAAAAATTTTTCG----GGTC---ATTTTTTTTGGAAATTTTT
** * * ***
35907 AGGGAAAACAATATTAAAAGCGTGAAAAGCCTTTCAATC
308 A---CCAA-AATCTT---A-C-T---AA-CC-ATCACGA
** ** ** * *
35946 TTTTTGGCATTGAGGAAAA-AATTTTC-GGGT--C-A-T-TTTTTTGCAAAATTTTTGCCAAAAT
1 TTTTTGGC--T-A--AAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGC---AC
* * * * *** ** * ** *
36004 CGTGTACTAAACATCAAA-AT-T-T-TTTGGCTAA-AAACGCGTTTCGGGGTCC-CGGTTCAATT
58 CGAG-ACT--CCTTGAAATATCTATATTCATCTAATAAAATC--TT---AG-CCACAATGC-A-T
* * * * * * * * **
36063 TTGCATGATTT-TTTTCACCGATAATCCTTTAAATATCTATATTC-AACTAA-TA-AAATT--TT
112 TT-AAGGATTTGTTTTTA-C---AAGCATCTGAATCTCT-T-TTCGATTTAATTAGAAATTAATT
* * * * ** * *** * ** **
36122 AGCCACAT---T-GCATTTAAGGAT-TT-G--TTTTTACGAG-CA-TCAGAATCTTTTTTTCGAT
170 CG-GAAATAAATAGGA-AAAACGATATTAGAAGCGTGAAAAGCCATTC--AATCTTTTTGGCG-T
* * * ** ***
36177 TTAATTA-G-AAATTA-ATTA-AATAAATAGGAAAAACGATATTAGAAGTGTGAAAAGCCATTCA
230 TGAATTATGTATATTATATTAGTAT-TTTA-TCCAAA--A-ATT--AA--G-G--AA---A---A
* * * * * * **
36238 ATCTTTTTGACGTTGAATTATATATATTT-CATGAGTATTTTATCCAAAAAT-TGAGGAAAAACT
277 AT-TTTTCG--GGT-CATT-T-T-T-TTTGGA--AAT-TTTTA-CC-AAAATCT---TACTAAC-
** *
36301 TTTCAGGTCA
325 CATCACG--A
* ** *
36311 TTTTTTTGCAAATTTTTAGTTAAAATCGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCA
1 -TTTTTGGC-------TA---AAAA-C-A-CGTT---T-------CG--G---GGTCCCGACTCA
*
36376 GTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTATC
37 GTTTTGCATGATTTTTGGCACCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGC
* *
36441 CATATTGCATTTAAGGATTTGTTTTTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTA
102 CACAATGCATTTAAGGATTTGTTTTTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTA
* * * *
36506 ATTCGG-AA-AAATTGGAAAAACGATATTAGAAGCGTGAAGAA-CCCTTCAATATTTTTGACGTT
167 ATTCGGAAATAAATAGGAAAAACGATATTAGAAGCGTGAA-AAGCCATTCAATCTTTTTGGCGTT
* * * * * *
36568 GAATTATATATATTTTATGAGTATTTTCTCCAAAAATTGAGGAAAATTTTTTCGGGTCA-TTTTT
231 GAATTATGTATATTATATTAGTATTTTATCCAAAAATTAAGGAAAAATTTTTCGGGTCATTTTTT
* * *
36632 TTGCAAATTTTTAGTCAAAATCGTGTACTAACCATTACGA
296 TTGGAAATTTTTA-CCAAAATC-T-TACTAACCATCACGA
* * * * * * **
36672 TTTTTGGCTAAAAACACGTTTCGGAGTCCCGACTTAGTTTCGCTTGATTTTTGGTACTGAGTTTC
1 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGACTC
* *
36737 CTTGAAATATCCATATTCATCTAATAAAATCTTAGCCACAATGCTTTTAAGGATTTGTTTTTACA
66 CTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACA
* *
36802 AGCATCTGAATCGCTTTTCGATTTAATTAGAAATTAATTCGGAAAT-AATAGGAAAAACAATATT
131 AGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
*
36866 AGAAGCGTGAAAAGCCCTTCAAT-TTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
196 AGAAGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
* *
36930 CAAAAATTGAGG-AAAATTATTTCGGGTCATTTTTTTTGGAAATTTTTAGCCAAACTCGTGTACT
261 CAAAAATTAAGGAAAAATT-TTTCGGGTCATTTTTTTTGGAAATTTTTA-CCAAAATC-T-TACT
36994 AACCATCACGA
322 AACCATCACGA
* *
37005 TTTTTGGCTAAAAACACGTTTCGGGGT-CCGACTTAGTTTTGCATGATTTTTGGCACCAAGACTC
1 TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGACTC
* * *
37069 CTTGACATATCTATATTCATCTAATAAAATCTTAGGCATAATGCATTTAAGGATTTGTTTTTACA
66 CTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACA
** * ** *
37134 ATAATCTAAATCTCTTTTCGATTTTGTTAGAAATTAATTCGGGAA-AAATAGGAAAAACGATATT
131 AGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
* *
37198 AGAAGCGTGAAAAGCCCTTCAATCTTTTTGACGTTGAAT
196 AGAAGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAAT
37237 CTTAGCCACA
Statistics
Matches: 1782, Mismatches: 346, Indels: 363
0.72 0.14 0.15
Matches are distributed among these distances:
324 123 0.07
325 1 0.00
326 4 0.00
327 54 0.03
328 68 0.04
329 1 0.00
330 102 0.06
331 109 0.06
332 446 0.25
333 175 0.10
334 41 0.02
335 170 0.10
337 4 0.00
338 15 0.01
339 3 0.00
342 2 0.00
344 1 0.00
345 12 0.01
346 1 0.00
347 6 0.00
348 4 0.00
349 2 0.00
350 5 0.00
351 3 0.00
352 2 0.00
353 2 0.00
354 4 0.00
355 22 0.01
356 17 0.01
357 10 0.01
358 10 0.01
359 11 0.01
360 29 0.02
361 18 0.01
362 4 0.00
363 16 0.01
364 22 0.01
365 14 0.01
366 13 0.01
367 9 0.01
368 18 0.01
369 9 0.01
370 15 0.01
371 11 0.01
372 3 0.00
373 2 0.00
374 1 0.00
375 8 0.00
376 2 0.00
378 1 0.00
379 1 0.00
382 5 0.00
383 5 0.00
384 14 0.01
385 8 0.00
387 17 0.01
388 12 0.01
389 7 0.00
390 15 0.01
391 17 0.01
392 13 0.01
393 14 0.01
394 9 0.01
395 5 0.00
396 15 0.01
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (332 bp):
TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGACTC
CTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACA
AGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATT
AGAAGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTATC
CAAAAATTAAGGAAAAATTTTTCGGGTCATTTTTTTTGGAAATTTTTACCAAAATCTTACTAACC
ATCACGA
Found at i:35930 original size:140 final size:137
Alignment explanation
Indices: 35681--35951 Score: 371
Period size: 140 Copynumber: 2.0 Consensus size: 137
35671 CATCTAATAA
* * * * *
35681 AATCTTAGCCATAATGCATTTAAGGTTTGATTTTACAATAATCTAAATCTCTTTTCGATTTAGTT
1 AATCTTAGCCACAATGCATTTAAGATTTGATTTTACAAGAATCTAAATCTCTTTTCGATTTAATC
* * * *
35746 AGAAATTAATTCGGGAAAAATAGGAAAAACAGTATTAGAAGCGTGAAAATCCCTTCAATCTTTTT
66 AGAAATTAATTCGGAAAAAATAGGAAAAACAATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTT
35811 GACGTTG
131 GACGTTG
* * * * *
35818 AATCTTAGCCACATTGCATTTAAGAATTTGTTTTTACGAGCATCTAAATCTTTTTTTCGATTTAA
1 AATCTTAGCCACAATGCATTTAAG-ATTTGATTTTACAAGAATCTAAATC-TCTTTTCGATTTAA
* *
35883 TCAGAAATTAATTCGGAAATAAATAGGGAAAACAATATTAAAAGCGTGAAAAGCCTTTCAATCTT
64 TCAGAAATTAATTCGGAAA-AAATAGGAAAAACAATATTAAAAGCGTGAAAAGCCCTTCAATCTT
35948 TTTG
128 TTTG
35952 GCATTGAGGA
Statistics
Matches: 115, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
137 22 0.19
138 20 0.17
139 29 0.25
140 44 0.38
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (137 bp):
AATCTTAGCCACAATGCATTTAAGATTTGATTTTACAAGAATCTAAATCTCTTTTCGATTTAATC
AGAAATTAATTCGGAAAAAATAGGAAAAACAATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTT
GACGTTG
Found at i:36943 original size:332 final size:330
Alignment explanation
Indices: 35954--37236 Score: 1755
Period size: 332 Copynumber: 3.9 Consensus size: 330
35944 TCTTTTTGGC
* *
35954 ATTGAGGAAAAAATTTTCGGGTCATTTTTTTGCAAAATTTTTGCCAAAATCGTGTACTAAACATC
1 ATTGAGGAAAAATTTTTCGGGTCATTTTTTTGC-AAATTTTTGCCAAAATCGTGTACTAACCATC
** * * * **
36019 AAAATTTTTTGGCTAAAAACGCGTTTCGGGGTCCCG-GTTCAATTTTGCATGATTTTTTTCACCG
65 ACGA-TTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTT-AGTTTTGCATGATTTTTGGCACCG
* * * * * *
36083 ATAATCCTTTAAATATCTATATTCAACTAATAAAATTTTAGCCACATTGCATTTAAGGATTTGTT
128 AGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTT
* * * *
36148 TTTACGAGCATCAGAATCTTTTTTTCGATTTAATTAGAAATTAATT--AAATAAATAGGAAAAAC
193 TTTACAAGCATCTGAATC-TCTTTTCGATTTAATTAGAAATTAATTCGGAA-AAATAGGAAAAAC
* *
36211 GATATTAGAAGTGTGAAAAGCCATTCAATCTTTTTGACGTTGAATTATATATATTTCATGAGTAT
256 GATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGACGTTGAATTATATATATTT-ATGAGTAT
36276 TTTATCCAAAA
320 TTTATCCAAAA
* *
36287 ATTGAGGAAAAACTTTTCAGGTCATTTTTTTGCAAATTTTT------A--GT-TA--AA--AT--
1 ATTGAGGAAAAATTTTTCGGGTCATTTTTTTGCAAATTTTTGCCAAAATCGTGTACTAACCATCA
*
36337 CGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCGAGA
66 CGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTTAGTTTTGCATGATTTTTGGCACCGAGA
* * *
36402 CTCCTTGAAATATCTATATTCATCTAATAAAATCTTATCCATATTGCATTTAAGGATTTGTTTTT
131 CTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTT
*
36467 ACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAATTGGAAAAACGATAT
196 ACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGATAT
* *
36532 TAGAAGCGTGAAGAA-CCCTTCAATATTTTTGACGTTGAATTATATATATTTTATGAGTATTTTC
261 TAGAAGCGTGAA-AAGCCCTTCAATCTTTTTGACGTTGAATTATATATA-TTTATGAGTATTTTA
36596 TCCAAAA
324 TCCAAAA
* * *
36603 ATTGAGGAAAATTTTTTCGGGTCATTTTTTTGCAAATTTTTAGTCAAAATCGTGTACTAACCATT
1 ATTGAGGAAAAATTTTTCGGGTCATTTTTTTGCAAATTTTT-GCCAAAATCGTGTACTAACCATC
* * * * *
36668 ACGATTTTTGGCTAAAAACACGTTTCGGAGTCCCGACTTAGTTTCGCTTGATTTTTGGTACTGAG
65 ACGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTTAGTTTTGCATGATTTTTGGCACCGAG
** * *
36733 TTTCCTTGAAATATCCATATTCATCTAATAAAATCTTAGCCACAATGCTTTTAAGGATTTGTTTT
130 ACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTT
* *
36798 TACAAGCATCTGAATCGCTTTTCGATTTAATTAGAAATTAATTCGGAAATAATAGGAAAAACAAT
195 TACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAA-AATAGGAAAAACGAT
* * *
36863 ATTAGAAGCGTGAAAAGCCCTTCAAT-TTTTTGGCGTTGAATTATGTATATTATATTAGTATTTT
259 ATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGACGTTGAATTATATATATT-TATGAGTATTTT
36927 ATCCAAAA
323 ATCCAAAA
* *
36935 ATTGAGG-AAAATTATTTCGGGTCATTTTTTTTGGAAATTTTTAGCCAAACTCGTGTACTAACCA
1 ATTGAGGAAAAATT-TTTCGGGTCA-TTTTTTTGCAAATTTTT-GCCAAAATCGTGTACTAACCA
*
36999 TCACGATTTTTGGCTAAAAACACGTTTCGGGGT-CCGACTTAGTTTTGCATGATTTTTGGCACCA
63 TCACGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTTAGTTTTGCATGATTTTTGGCACCG
* * *
37063 AGACTCCTTGACATATCTATATTCATCTAATAAAATCTTAGGCATAATGCATTTAAGGATTTGTT
128 AGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTT
** * **
37128 TTTACAATAATCTAAATCTCTTTTCGATTTTGTTAGAAATTAATTCGGGAAAAATAGGAAAAACG
193 TTTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTC-GGAAAAATAGGAAAAACG
37193 ATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGACGTTGAAT
257 ATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGACGTTGAAT
37237 CTTAGCCACA
Statistics
Matches: 847, Mismatches: 75, Indels: 56
0.87 0.08 0.06
Matches are distributed among these distances:
315 26 0.03
316 240 0.28
317 9 0.01
319 2 0.00
321 2 0.00
323 3 0.00
324 2 0.00
325 2 0.00
326 3 0.00
328 2 0.00
330 2 0.00
331 7 0.01
332 394 0.47
333 153 0.18
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (330 bp):
ATTGAGGAAAAATTTTTCGGGTCATTTTTTTGCAAATTTTTGCCAAAATCGTGTACTAACCATCA
CGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTTAGTTTTGCATGATTTTTGGCACCGAGA
CTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTT
ACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGATAT
TAGAAGCGTGAAAAGCCCTTCAATCTTTTTGACGTTGAATTATATATATTTATGAGTATTTTATC
CAAAA
Found at i:37362 original size:140 final size:138
Alignment explanation
Indices: 37096--37367 Score: 373
Period size: 140 Copynumber: 2.0 Consensus size: 138
37086 CATCTAATAA
* * * * **
37096 AATCTTAGGCATAATGCATTTAAGGATTTGTTTTTACAATAATCTAAATCTCTTTTCGATTTTGT
1 AATCTTAGCCACAATGCATTTAAGAATTTGTTTTTACAAGAATCTAAATCTCTTTTCGATTTAAT
* * * *
37161 TAGAAATTAATTCGGGAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTT
66 CAGAAATTAATTCGGAAAAAATAGGAAAAACAATATTAAAAGCGTGAAAAGCCCTTCAATCTTTT
37226 TGACGTTG
131 TGACGTTG
* * * * *
37234 AATCTTAGCCACATTGCATTTAAGAATTTGTTTTTACGAGCATCTGAATCTATTTTTCGATTTAA
1 AATCTTAGCCACAATGCATTTAAGAATTTGTTTTTACAAGAATCTAAATCT-CTTTTCGATTTAA
* *
37299 TCAGAAATTAATTCGGAAATAAATAGGGAAAACAATATTAAAAGCGTGAAAAGCCTTTCAATCTT
65 TCAGAAATTAATTCGGAAA-AAATAGGAAAAACAATATTAAAAGCGTGAAAAGCCCTTCAATCTT
37364 TTTG
129 TTTG
37368 GCATTGAGGA
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
138 43 0.37
139 27 0.23
140 45 0.39
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (138 bp):
AATCTTAGCCACAATGCATTTAAGAATTTGTTTTTACAAGAATCTAAATCTCTTTTCGATTTAAT
CAGAAATTAATTCGGAAAAAATAGGAAAAACAATATTAAAAGCGTGAAAAGCCCTTCAATCTTTT
TGACGTTG
Found at i:38465 original size:334 final size:332
Alignment explanation
Indices: 37370--38675 Score: 1899
Period size: 334 Copynumber: 3.9 Consensus size: 332
37360 TCTTTTTGGC
* * * *
37370 ATTGAGGAAAAAATTTTCGAGTCATTTTTTTGCAAAATTTTT-GCCAAAATCGTGTACTAAACAT
1 ATTGAGGAAAAATTTTTCGGGTCATTTTTTTG-GAAATTTTTAGCCAAAATCGTGTACTAACCAT
* * * * * **
37434 CACAATTTTTTGGCTAAAAAACGCGTTTCGGGGTCCCAGTTCAATTTTGCAAAATTTTT-GCACC
65 CACGA-TTTTTGGCT-AAAAACACGTTTCGGGGTCCGA-CTCAGTTTTGCATGATTTTTGGCACC
* * * * *
37498 GATAATCCTTTAAATATCTATATTCAACTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGT
127 GAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGT
* * *
37563 TTTTACGAGCATCAGAATCTTTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAA
192 TTTTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAT-AATAGGAAAAA
* * *
37628 CGATATTAGAAGTGTGAAAAG-CCATTCAATCTTTTTGGCGTTGAATTATATATA-TATTATGAG
256 CGATATTAGAAGCGTGAAAAGACC-TTCAATCTTTTTGGCGTTGAATTATGTATATTA-TATTAG
37691 TATTTTATCCAAAA
319 TATTTTATCCAAAA
* * * * ** *
37705 ATTGAGGAAAAAATTTTTCAGGTCATTTTTCTGCAAATTTTTTGGTTAAATTCGTGTACTAACCA
1 ATTGAGG-AAAAATTTTTCGGGTCATTTTTTTGGAAA-TTTTTAGCCAAAATCGTGTACTAACCA
37770 TCACGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCACCG
64 TCACGATTTTTGGCTAAAAACACGTTTCGGGGT-CCGACTCAGTTTTGCATGATTTTTGGCACCG
* * *
37835 AGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTATCCATATTGCATTTAAGGATTTGTT
128 AGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTT
*
37900 TTTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACG
193 TTTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAATAGGAAAAACG
*
37965 ATATTAGAAGCGTGAAAA-ACTCTTCAATTTTTTTGGCGTTGAATTATGTATATTATATTAGTAT
258 ATATTAGAAGCGTGAAAAGAC-CTTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTAT
* *
38029 TTTATCTAAAG
322 TTTATCCAAAA
** *
38040 ATTGAGTTAAAATTTTTCGGGTCATTTTTTTTGGAAATTTTTAGCCAAAATCGTATACTAACCAT
1 ATTGAGGAAAAATTTTTCGGGTCA-TTTTTTTGGAAATTTTTAGCCAAAATCGTGTACTAACCAT
38105 CACGATTTTTGGCTAAAAACACGTTTCGGGGTCCGACTCAGTTTTGCATGATTTTTGGCACCGAG
65 CACGATTTTTGGCTAAAAACACGTTTCGGGGTCCGACTCAGTTTTGCATGATTTTTGGCACCGAG
* * *
38170 TCTCCTTGAAATATCCATATTCTTCTAATAAAATCTTAGCCACAATGC-TTTAAAGGATTTGTTT
130 ACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTT-AAGGATTTGTTT
* *
38234 TTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAATCGTAAAAACGA
194 TTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAATAGGAAAAACGA
*
38299 TATTAGAAGCGTGAAAAGACCTTCAATTTTTTTGGCGTTGAATTATGTATATTATATTAGTATTT
259 TATTAGAAGCGTGAAAAGACCTTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTT
38364 TATCCAAAA
324 TATCCAAAA
*
38373 ATTGAGGAAAATTTTTTCGGGTCATTTTTTTTTGGAAATTTTTAGCCAAAATCGTGTACTAACCA
1 ATTGAGGAAAAATTTTTCGGGTCA--TTTTTTTGGAAATTTTTAGCCAAAATCGTGTACTAACCA
* * *
38438 TCATGATTTTTGGCTAAAAACACGTTTCGGGGTCCGACTCAGTTTTGCATGATTTTTGGCCCCAA
64 TCACGATTTTTGGCTAAAAACACGTTTCGGGGTCCGACTCAGTTTTGCATGATTTTTGGCACCGA
* *
38503 GACACCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCATAATGCATTTAAGGATTTGTTT
129 GACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTT
* *
38568 TTACAA-CAATCTAAATCTCTTTTCGATTTAGTTAGAAATTAATTCGGGAAA-AATAGGAAAAAC
194 TTACAAGC-ATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTC-GGAAATAATAGGAAAAAC
* * *
38631 GATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTGACGTTGAAT
257 GATATTAGAAGCGTGAAAAGACCTTCAATCTTTTTGGCGTTGAAT
38676 CTTAGCCACA
Statistics
Matches: 883, Mismatches: 73, Indels: 31
0.89 0.07 0.03
Matches are distributed among these distances:
332 3 0.00
333 240 0.27
334 321 0.36
335 143 0.16
336 154 0.17
337 22 0.02
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (332 bp):
ATTGAGGAAAAATTTTTCGGGTCATTTTTTTGGAAATTTTTAGCCAAAATCGTGTACTAACCATC
ACGATTTTTGGCTAAAAACACGTTTCGGGGTCCGACTCAGTTTTGCATGATTTTTGGCACCGAGA
CTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTT
ACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAATAGGAAAAACGATA
TTAGAAGCGTGAAAAGACCTTCAATCTTTTTGGCGTTGAATTATGTATATTATATTAGTATTTTA
TCCAAAA
Found at i:38659 original size:667 final size:670
Alignment explanation
Indices: 37378--38675 Score: 1974
Period size: 667 Copynumber: 1.9 Consensus size: 670
37368 GCATTGAGGA
*
37378 AAAAATTTTCGAGTCATTTTTTTGCAAAATTTTTGCCAAAATCGTGTACTAAACATCACAATTTT
1 AAAAATTTTCGAGTCATTTTTTTGCAAAATTTTTGCCAAAATCGTATACTAAACATCACAATTTT
* *
37443 TTGGCTAAAAAACGCGTTTCGGGGTCCCAGTTCAATTTTGCAAAATTTTTGCACCGATAATCCTT
66 TTGGCTAAAAAACACGTTTCGGGGTCCCAGCTCAATTTTGCAAAATTTTTGCACCGATAATCCTT
* * * *
37508 TAAATATCTATATTCAACTAATAAAATCTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGC
131 GAAATATCCATATTCAACTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACAAGC
*
37573 ATCAGAATCTTTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATTAGA
196 ATCAGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATTAGA
*
37638 AGTGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATATATATATTATGAGTATTTTATCCAA
261 AGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATATATATATTATGAGTATTTTATCCAA
* ** *
37703 AAATTGAGGAAAAAATTTTTCAGGTCATTTTTCTGCAAATTTTTTGGTTAAATTCGTGTACTAAC
326 AAATTGAGGAAAAAATTTTTCAGGTCATTTTTCTGCAAATTTTTTAGCCAAAATCGTGTACTAAC
37768 CATCACGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCAC
391 CATCACGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCAC
* * * *
37833 CGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTATCCATATTGCATTTAAGGATTTG
456 CAAGACACCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCATAATGCATTTAAGGATTTG
*
37898 TTTTTACAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
521 TTTTTACAAGCATCTAAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
* * * *
37963 CGATATTAGAAGCGTGAAAAACTCTTCAATTTTTTTGGCGTTGAATTATGTATATTATATTAGTA
586 CGATATTAGAAGCATGAAAAACCCTTCAATCTTTTTGACGTTGAATTATGTATATTATATTAGTA
38028 TTTTATCTAAAGATTGAGTT
651 TTTTATCTAAAGATTGAGTT
* * * * *
38048 AAAATTTTTCGGGTCATTTTTTTTG-GAAATTTTTAGCCAAAATCGTATACTAACCATCACGA-T
1 AAAAATTTTCGAGTCA-TTTTTTTGCAAAATTTTT-GCCAAAATCGTATACTAAACATCACAATT
* * ** *
38111 TTTTGGCT-AAAAACACGTTTCGGGGTCCGA-CTCAGTTTTGCATGATTTTTGGCACCGAGT-CT
64 TTTTGGCTAAAAAACACGTTTCGGGGTCCCAGCTCAATTTTGCAAAATTTTT-GCACCGA-TAAT
**
38173 CCTTGAAATATCCATATTCTTCTAATAAAATCTTAGCCACAATGC-TTTAAAGGATTTGTTTTTA
127 CCTTGAAATATCCATATTCAACTAATAAAATCTTAGCCACAATGCATTT-AAGGATTTGTTTTTA
* * *
38237 CAAGCATCTGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAT-AATCGTAAAAACGATA
191 CAAGCATCAGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATA
* * *
38301 TTAGAAGCGTGAAAAGACC-TTCAATTTTTTTGGCGTTGAATTATGTATAT-TATATTAGTATTT
256 TTAGAAGCGTGAAAAG-CCATTCAATCTTTTTGGCGTTGAATTATATATATAT-TATGAGTATTT
* * * *
38364 TATCCAAAAATTGAGG-AAAATTTTTTCGGGTCATTTTTTTTTGGAAA-TTTTTAGCCAAAATCG
319 TATCCAAAAATTGAGGAAAAAATTTTTCAGGTCA--TTTTTCTGCAAATTTTTTAGCCAAAATCG
*
38427 TGTACTAACCATCATGATTTTTGGCTAAAAACACGTTTCGGGGT-CCGACTCAGTTTTGCATGAT
382 TGTACTAACCATCACGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGAT
*
38491 TTTTGGCCCCAAGACACCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCATAATGCATTT
447 TTTTGGCACCAAGACACCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCATAATGCATTT
* *
38556 AAGGATTTGTTTTTACAA-CAATCTAAATCTCTTTTCGATTTAGTTAGAAATTAATTCGGGAAAA
512 AAGGATTTGTTTTTACAAGC-ATCTAAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAA
*
38620 ATAGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAATCTTTTTGACGTTGAAT
576 ATAGGAAAAACGATATTAGAAGCATGAAAAACCCTTCAATCTTTTTGACGTTGAAT
38676 CTTAGCCACA
Statistics
Matches: 569, Mismatches: 49, Indels: 23
0.89 0.08 0.04
Matches are distributed among these distances:
666 1 0.00
667 206 0.36
668 158 0.28
669 140 0.25
670 32 0.06
671 32 0.06
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (670 bp):
AAAAATTTTCGAGTCATTTTTTTGCAAAATTTTTGCCAAAATCGTATACTAAACATCACAATTTT
TTGGCTAAAAAACACGTTTCGGGGTCCCAGCTCAATTTTGCAAAATTTTTGCACCGATAATCCTT
GAAATATCCATATTCAACTAATAAAATCTTAGCCACAATGCATTTAAGGATTTGTTTTTACAAGC
ATCAGAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAATAAATAGGAAAAACGATATTAGA
AGCGTGAAAAGCCATTCAATCTTTTTGGCGTTGAATTATATATATATTATGAGTATTTTATCCAA
AAATTGAGGAAAAAATTTTTCAGGTCATTTTTCTGCAAATTTTTTAGCCAAAATCGTGTACTAAC
CATCACGATTTTTGGCTAAAAACACGTTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCAC
CAAGACACCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCATAATGCATTTAAGGATTTG
TTTTTACAAGCATCTAAATCTCTTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
CGATATTAGAAGCATGAAAAACCCTTCAATCTTTTTGACGTTGAATTATGTATATTATATTAGTA
TTTTATCTAAAGATTGAGTT
Done.