Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010366.1 Corchorus capsularis cultivar CVL-1 contig10387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13197
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Found at i:324 original size:3 final size:3
Alignment explanation
Indices: 318--347 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
308 TAGAATCAAA
318 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
348 ATTATTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:352 original size:3 final size:3
Alignment explanation
Indices: 346--386 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
336 CTTCTTCTTC
346 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
387 GAAGTAGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:3426 original size:2 final size:2
Alignment explanation
Indices: 3415--3444 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
3405 TTTGTTCGAT
3415 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3445 TAATTATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9917 original size:21 final size:22
Alignment explanation
Indices: 9879--9919 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
9869 CTTGGATGAC
* *
9879 AATAAGATTTTTTTTTTATTTT
1 AATAAGATATTTTATTTATTTT
9901 AATAA-ATATTTTATTTATT
1 AATAAGATATTTTATTTATT
9920 AAGGAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
AATAAGATATTTTATTTATTTT
Found at i:10020 original size:26 final size:26
Alignment explanation
Indices: 9984--10033 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
9974 GGGTCCCGAT
* *
9984 TAGAATTGTCTTTTTTTTTTTTGAGA
1 TAGAATTGTCTTCTTTTATTTTGAGA
10010 TAGAATTGTCTTCTTTTATTTTGA
1 TAGAATTGTCTTCTTTTATTTTGA
10034 ATATAGTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.06, G:0.14, T:0.60
Consensus pattern (26 bp):
TAGAATTGTCTTCTTTTATTTTGAGA
Found at i:11969 original size:651 final size:650
Alignment explanation
Indices: 10195--12249 Score: 2625
Period size: 651 Copynumber: 3.1 Consensus size: 650
10185 TTCGAGTTAG
* *
10195 TTTTTGCAAAAATTTAGCCGAAATCGTGTACTAACCATCACGATATTTGGCTAAAAACGCGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATATTTGGCTAAAAACGCGTTTC
* * * *** *
10260 AGGGCTTCGGCTCAG-TTTGCATGACTTTTAGCGTCAAAATTCGCCGAAATATCTATATTCATCT
66 AGGGCTCCGGCTCAGTTTTGAATGACTTTTGGCGTCGGGACTCGCCGAAATATCTATATTCATCT
* * * * *
10324 AATAAAATCTCAGTCACATTAGGTTTAAGGATATGTTTTTACGAGTATCTAAATTTTGTTTAGAT
131 AATCAAATCTCAGCCACATTAGATTTAAGGATATGTTTTTACGAGCATCTAAATCTTGTTTAGAT
* * * * *
10389 TTAATCAAAAATTAAATTACCAAAAAAAAAAAAGAACAACAATATGAGTAGCGTAAAAAGCCCTT
196 TTAATCAGAAATTAAA-T----AACAAAAAAAAGAACAACGATATTAGAAGCGTAAAAA--CCTT
* * * ** *
10454 CAATCTTTTCGGCGCTAAATTCTAAATTTTTTATAAGTGCTGTGGTTAAAAATTGACGAAAAATT
254 CAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGAGGAAAAATT
* * * * * * * *
10519 TTTCGGGTCAATTTTTGCAGAATTTTACCCGAAATCATATACCAACAACCATCATGATAAATTGA
319 TTTCGAGTCAATTTTTGCAAAAATTTAGCAGAAATCGTATA-C--TAACCATCACGAT-AA-T--
* * * ** * * **
10584 TAATTGGTTAAAAACGCGTTCCAGGGCTCCGGTTAAGTTTTAAATGATTTTTGGCATCGGGACTC
377 T-A--GGCTAAAAACGCGTTCCAGGGCTCCGGCTCAGTTTTGCATGACTTTTGGCGTCGAAACTC
* ** *
10649 GCCGAAATATCTATATTCATCTAAACAAATTTCAGCCACATTA-GATTTAAGGATTTGTTTTTAC
439 GCCGAAATATCTATATTCATCTAATCAAATCACAGCCACATTATG-TTTAAGGATATGTTTTTAC
* * * * **
10713 GAGCATCTGAATCTTGTTCCGATTTAATCAGAAATAAAATT-----AAAAAAA-AACAATGATAT
503 GAGTATCTGAATGTTGTTTCGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAACAACAATAT
* * * *
10772 TTGAAGCATGAAAAGCCTTTCAATCTTTTTGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGG
568 TAGAAGCGTGAAAAGCCCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGG
**
10837 CAAAAAATTGAGAAAAAA
633 TGAAAAATTGAGAAAAAA
* * *
10855 TTTTTCGGGTTTGTTTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACTATATTTGGCT
1 -------------TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATATTTGGCT
* ** * *
10920 AAAAATGCACTTCAGGGCTCCGGCTCAGTTTTGAATGATTTTTGGCGTCGGGACTCACCGAAATA
53 AAAAACGCGTTTCAGGGCTCCGGCTCAGTTTTGAATGACTTTTGGCGTCGGGACTCGCCGAAATA
* * * *
10985 TCTATATTCATCTAATCTAATCTCAGCGACTTTAGATTTAAGGATATGTTTTTACGAGCATCTGA
118 TCTATATTCATCTAATCAAATCTCAGCCACATTAGATTTAAGGATATGTTTTTACGAGCATCTAA
* * * *
11050 ATCTTGTTCAGATTTAATTAGCAATTAAATTACAAAATAAAAGAACAACGATATTAGAAGCGT--
183 ATCTTGTTTAGATTTAATCAGAAATTAAATAACAAAA-AAAAGAACAACGATATTAGAAGCGTAA
11113 ----C-TCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGAGG
247 AAACCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGAGG
*
11173 AAAAATTTTTCGAGTCAGTTTTTTGCAAAAATTTAGCAGAAATCGTATACTAACCATCACGATAA
312 AAAAATTTTTCGAGTCA-ATTTTTGCAAAAATTTAGCAGAAATCGTATACTAACCATCACGATAA
* * *
11238 TT-GGCTAAAAACACGATCTAGGGCTCCGGCTCAGTTTTGCATGACTTTTGGCGTCGAAACTCGC
376 TTAGGCTAAAAACGCGTTCCAGGGCTCCGGCTCAGTTTTGCATGACTTTTGGCGTCGAAACTCGC
*
11302 CGAAATATCTATATTCATCTAATCAAATCACAGCCACATTATGTTTAAGGATATCTTTTTACGAG
441 CGAAATATCTATATTCATCTAATCAAATCACAGCCACATTATGTTTAAGGATATGTTTTTACGAG
11367 TATCTGAATGTTGTTTCGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAACAACAATATTAG
506 TATCTGAATGTTGTTTCGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAACAACAATATTAG
*
11432 AAGCGTGAATAGCCCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGTGA
571 AAGCGTGAAAAGCCCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGTGA
11497 AAAATTGATG-AAAAA
636 AAAATTGA-GAAAAAA
11512 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATATTTGGCTAAAAACGCGTTTC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATATTTGGCTAAAAACGCGTTTC
* * *
11577 AGGTCTCCGGCTCAGTTTTGAAGGACTTTTGGCGTCGGGACTCGCCGAAATATCTATAGTCATCT
66 AGGGCTCCGGCTCAGTTTTGAATGACTTTTGGCGTCGGGACTCGCCGAAATATCTATATTCATCT
* * * * *
11642 AATCAAATCTCAGCCACATTAGATTGAAAGATTTGTTTTTACGAGCATCTTAATCTTGTTTTGAT
131 AATCAAATCTCAGCCACATTAGATTTAAGGATATGTTTTTACGAGCATCTAAATCTTGTTTAGAT
*
11707 TTAATCAGAAATTAAATAACAAAAAAAAGAACAACGATATTAGAAGCGTCAAAAACCATTCAATG
196 TTAATCAGAAATTAAATAACAAAAAAAAGAACAACGATATTAGAAGCGT-AAAAACC-TTCAATC
*
11772 TTTTTGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGAGGAAAAATTTTTCG
259 TTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGAGGAAAAATTTTTCG
* * *
11837 AGTCAATTTTTGTAAAAATTTAGCTGAAATCGTGTACTAACCATCACGAT-ATTAGGCTAAAAAC
324 AGTCAATTTTTGCAAAAATTTAGCAGAAATCGTATACTAACCATCACGATAATTAGGCTAAAAAC
* * * *
11901 GCGTTCCAGGGCTCCGGCTCAGTTTTGCATGGCTTTTGTCGTTGAAACTTGCCGAAATATCTATA
389 GCGTTCCAGGGCTCCGGCTCAGTTTTGCATGACTTTTGGCGTCGAAACTCGCCGAAATATCTATA
*
11966 TTCATTTAATCAAATCACAGCCACATTATGTTTAAGGATATGTTTTTACGAGTATCTGAATGTTG
454 TTCATCTAATCAAATCACAGCCACATTATGTTTAAGGATATGTTTTTACGAGTATCTGAATGTTG
12031 TTTCGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAACAACAATATTAGAAGCGTGAAAAGC
519 TTTCGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAACAACAATATTAGAAGCGTGAAAAGC
*
12096 CCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTATGGTGAAAAATTGAAGAAA
584 CCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGTGAAAAATTG-AG--A
12161 AAATTTTCGTGTCAA
646 AAA----------AA
* * *
12176 TTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGATATTTGACTACAAACGCGTTTC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATATTTGGCTAAAAACGCGTTTC
12241 AGGGCTCCG
66 AGGGCTCCG
12250 TGTAATATCG
Statistics
Matches: 1223, Mismatches: 124, Indels: 79
0.86 0.09 0.06
Matches are distributed among these distances:
643 25 0.02
644 196 0.16
650 4 0.00
651 437 0.36
652 76 0.06
654 3 0.00
655 1 0.00
656 7 0.01
657 84 0.07
658 3 0.00
659 11 0.01
661 70 0.06
662 26 0.02
664 72 0.06
669 5 0.00
670 22 0.02
673 72 0.06
674 109 0.09
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (650 bp):
TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATATTTGGCTAAAAACGCGTTTC
AGGGCTCCGGCTCAGTTTTGAATGACTTTTGGCGTCGGGACTCGCCGAAATATCTATATTCATCT
AATCAAATCTCAGCCACATTAGATTTAAGGATATGTTTTTACGAGCATCTAAATCTTGTTTAGAT
TTAATCAGAAATTAAATAACAAAAAAAAGAACAACGATATTAGAAGCGTAAAAACCTTCAATCTT
TTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGAGGAAAAATTTTTCGAG
TCAATTTTTGCAAAAATTTAGCAGAAATCGTATACTAACCATCACGATAATTAGGCTAAAAACGC
GTTCCAGGGCTCCGGCTCAGTTTTGCATGACTTTTGGCGTCGAAACTCGCCGAAATATCTATATT
CATCTAATCAAATCACAGCCACATTATGTTTAAGGATATGTTTTTACGAGTATCTGAATGTTGTT
TCGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAACAACAATATTAGAAGCGTGAAAAGCCC
TTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGTGAAAAATTGAGAAAAAA
Found at i:12041 original size:975 final size:982
Alignment explanation
Indices: 10115--12249 Score: 2773
Period size: 975 Copynumber: 2.2 Consensus size: 982
10105 GTGAAAAGTT
* * * *
10115 CTTCAAT-TTTTATGGCGTTGAATTAC-ATATTTTTTATGATCAGTATTGTGGAAAAACTGAGGA
1 CTTCAATCTTTT-CGGCGTTGAATT-CTAAATTTTTTAT-A--AGTGTTGTGGAAAAATTGAGGA
* *
10178 AAAATTTTTCGAGTTAGTTTTTGCAAAAATTTAGCCGAAATCGTGTACTAACCATCACGATATTT
61 AAAATTTTTCGAGTCAGTTTTTGCAAAAATTTAGCCGAAATCGTGTACTAACCATCACGATAATT
* * * *
10243 GGCTAAAAACGCGTTCCAGGGCTTCGGCTCAGTTTGCATGACTTTTAGCGTCAAAATTCGCCGAA
126 GGCTAAAAACACGATCCAGGGCTCCGGCTCAGTTTGCATGACTTTTAGCGTCAAAACTCGCCGAA
* * *
10308 ATATCTATATTCATCTAATAAAATCTCAGTCACATTAGGTTTAAGGATATGTTTTTACGAGTATC
191 ATATCTATATTCATCTAATAAAATCACAGCCACATTAGGTTTAAGGATATCTTTTTACGAGTATC
* *
10373 TAAATTTTGTTTAGATTTAATCAAAAATTAAATTACCAAAAAAAAAAAAGAACAACAATATGAGT
256 TAAATGTTGTTTAGATTTAATCAAAAATTAAATTACC--AAAAAAAAAAGAACAACAATATGAGA
*
10438 AGCGTAAAAAGCCCTTCAATCTTTTCGGCGCTAAATTCTAAATTTTTTATAAGTGCTGTGGTTAA
319 AGCGTAAAAAGCCCTTCAATCTTTTCGGCGCTAAATTCTAAATTTTTTATAAGTGCTGTGGTGAA
10503 AAATTGACGAAAAATTTTTCGGGTCAATTTTTGCAGAATTTTACCCGAAATCATATACCAACAAC
384 AAATTGACGAAAAATTTTT--GGTCAA----T--AGAATTTTACCCGAAATCATATACC-ACAAC
* * * * *
10568 CATCATGATAAATTGATAATTGGTTAAAAACGCGTTCCAGGGCTCCGGTTAAGTTTTAAATGATT
440 CATCACG---AATTGAT-ATTGGCTAAAAACGCGTTCCAGGGCTCCGGCTAAGTTTTAAAGGACT
* * *
10633 TTTGGCATCGGGACTCGCCGAAATATCTATATTCATCTAAACAAATTTCAGCCACATTAGATTTA
501 TTTGGCATCGGGACTCGCCGAAATATCTATAGTCATCTAAACAAATCTCAGCCACATTAGATTGA
* **
10698 AGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATCAGAAATAAAATTAAAAAAAAA
566 AAGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATCAGAAATAAAACAAAAAAAAAA
* * * * *
10763 CAATGATATTTGAAGCATGAAAAGCCTTTCAATCTTTTTGGCGTTGAATTCTAAATTTTTTATAA
631 CAACGATATTAGAAGCATCAAAAACCATTCAATCTTTTTGGCGTTGAATTCTAAATTTTTTATAA
* *** *
10828 GTGTTGTGGCAAAAAATTGAGAAAAAATTTTTCGGGTTTGTTTTTGCAAAATTTTAGTCGAAATC
696 GTGTTGTGGCAAAAAATTGAGAAAAAATTTTTCGAGTCAATTTTTGCAAAAATTTAGTCGAAATC
* * *
10893 ATGTACTAACCATCACTATATTTGGCTAAAAATGCACTTCAGGGCTCCGGCTCAGTTTTGAATGA
761 ATGTACTAACCATCACGATATTAGGCTAAAAACGCACTTCAGGGCTCCGGCTCAGTTTTGAATGA
* ** * * * *
10958 TTTTTGGCGTCGGGACTCACCGAAATATCTATATTCATCTAATCTAATCTCAGCGACTTTAGATT
826 CTTTTGGCGTCGAAACTCACCGAAATATCTATATTCATCTAATCAAATCACAGCCACATTAGATT
* *
11023 TAAGGATATGTTTTTACGAGCATCTGAATCTTGTTCAGATTTAATTAGCAATTAAATTA-CAAAA
891 TAAGGATATGTTTTTACGAGCATCTGAATCTTGTTCAGATTTAATCAGAAATTAAATTACCAAAA
* *
11087 TAAAAGAACAACGATATTAGAAGCGT-
956 AAAAAGAACAACAATATTAGAAGCGTA
11113 C-TCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGAGGAAAA
1 CTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGG--AAAAATTGAGGAAAA
* *
11177 ATTTTTCGAGTCAGTTTTTTGCAAAAATTTAGCAGAAATCGTATACTAACCATCACGATAATTGG
64 ATTTTTCGAGTCAG-TTTTTGCAAAAATTTAGCCGAAATCGTGTACTAACCATCACGATAATTGG
* * *
11242 CTAAAAACACGATCTAGGGCTCCGGCTCAGTTTTGCATGACTTTTGGCGTCGAAACTCGCCGAAA
128 CTAAAAACACGATCCAGGGCTCCGGCTCAG-TTTGCATGACTTTTAGCGTCAAAACTCGCCGAAA
* *
11307 TATCTATATTCATCTAATCAAATCACAGCCACATTATGTTTAAGGATATCTTTTTACGAGTATCT
192 TATCTATATTCATCTAATAAAATCACAGCCACATTAGGTTTAAGGATATCTTTTTACGAGTATCT
* * * *
11372 GAATGTTGTTTCGATTTAATCAGAAATTAAATTACC-AAAAAAAAAGAACAACAATATTAGAAGC
257 AAATGTTGTTTAGATTTAATCAAAAATTAAATTACCAAAAAAAAAAGAACAACAATATGAGAAGC
* * * * *
11436 GTGAATAGCCCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGTGAAAAA
322 GTAAAAAGCCCTTCAATCTTTTCGGCGCTAAATTCTAAATTTTTTATAAGTGCTGTGGTGAAAAA
* * * * *
11501 TTGATGAAAAATTTTT-G-C-A-A-AATTTTAGCCGAAATCGTGTA-C-TAACCATCACG-A-T-
387 TTGACGAAAAATTTTTGGTCAATAGAATTTTACCCGAAATCATATACCACAACCATCACGAATTG
* * * * *
11556 AT-TTGGCTAAAAACGCGTTTCAGGTCTCCGGCTCAGTTTTGAAGGACTTTTGGCGTCGGGACTC
452 ATATTGGCTAAAAACGCGTTCCAGGGCTCCGGCTAAGTTTTAAAGGACTTTTGGCATCGGGACTC
*
11620 GCCGAAATATCTATAGTCATCTAATCAAATCTCAGCCACATTAGATTGAAAGATTTGTTTTTACG
517 GCCGAAATATCTATAGTCATCTAAACAAATCTCAGCCACATTAGATTGAAAGATTTGTTTTTACG
* **
11685 AGCATCTTAATCTTGTTTTGATTTAATCAGAAATTAAATAACAAAAAAAAGAACAACGATATTAG
582 AGCATCTGAATCTTGTTCCGATTTAATCAGAAA-T-AA-AACAAAAAAAA-AACAACGATATTAG
* *
11750 AAGCGTCAAAAACCATTCAATGTTTTTGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAA
643 AAGCATCAAAAACCATTCAATCTTTTTGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAA
* * *
11815 AAAATTGAGGAAAAATTTTTCGAGTCAATTTTTGTAAAAATTTAG-CTGAAATCGTGTACTAACC
708 AAAATTGAGAAAAAATTTTTCGAGTCAATTTTTGCAAAAATTTAGTC-GAAATCATGTACTAACC
* * * *
11879 ATCACGATATTAGGCTAAAAACGC-GTTCCAGGGCTCCGGCTCAGTTTTGCATGGCTTTTGTCGT
772 ATCACGATATTAGGCTAAAAACGCACTT-CAGGGCTCCGGCTCAGTTTTGAATGACTTTTGGCGT
* ** *
11943 TGAAACTTGCCGAAATATCTATATTCATTTAATCAAATCACAGCCACATTATG-TTTAAGGATAT
836 CGAAACTCACCGAAATATCTATATTCATCTAATCAAATCACAGCCACATTA-GATTTAAGGATAT
* *
12007 GTTTTTACGAGTATCTGAATGTTGTTTC-GATTTAATCAGAAATTAAATTACCAAAAAAAAAGAA
900 GTTTTTACGAGCATCTGAATCTTG-TTCAGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAA
12071 CAACAATATTAGAAGCGTGAAAA
964 CAACAATATTAGAAGCGT----A
* *
12094 GCCCTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTATGGTGAAAAATTGAAGA
1 ---CTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGT-G-GAAAAATTGAGGA
* * * * * *
12159 AAAAATTTTCGTGTCAATTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGATATTT
61 AAAATTTTTCGAGTCAGTTTTTGCAAAAATTTAGCCGAAATCGTGTACTAACCATCACGATAATT
* * * * *
12224 GACTACAAACGCGTTTCAGGGCTCCG
126 GGCTAAAAACACGATCCAGGGCTCCG
12250 TGTAATATCG
Statistics
Matches: 999, Mismatches: 112, Indels: 66
0.85 0.10 0.06
Matches are distributed among these distances:
971 143 0.14
972 1 0.00
973 4 0.00
974 13 0.01
975 274 0.27
976 33 0.03
979 9 0.01
981 1 0.00
982 18 0.02
983 1 0.00
984 64 0.06
985 68 0.07
986 1 0.00
987 1 0.00
990 1 0.00
991 1 0.00
992 1 0.00
994 9 0.01
995 100 0.10
996 29 0.03
997 99 0.10
998 128 0.13
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (982 bp):
CTTCAATCTTTTCGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGAAAAATTGAGGAAAAAT
TTTTCGAGTCAGTTTTTGCAAAAATTTAGCCGAAATCGTGTACTAACCATCACGATAATTGGCTA
AAAACACGATCCAGGGCTCCGGCTCAGTTTGCATGACTTTTAGCGTCAAAACTCGCCGAAATATC
TATATTCATCTAATAAAATCACAGCCACATTAGGTTTAAGGATATCTTTTTACGAGTATCTAAAT
GTTGTTTAGATTTAATCAAAAATTAAATTACCAAAAAAAAAAGAACAACAATATGAGAAGCGTAA
AAAGCCCTTCAATCTTTTCGGCGCTAAATTCTAAATTTTTTATAAGTGCTGTGGTGAAAAATTGA
CGAAAAATTTTTGGTCAATAGAATTTTACCCGAAATCATATACCACAACCATCACGAATTGATAT
TGGCTAAAAACGCGTTCCAGGGCTCCGGCTAAGTTTTAAAGGACTTTTGGCATCGGGACTCGCCG
AAATATCTATAGTCATCTAAACAAATCTCAGCCACATTAGATTGAAAGATTTGTTTTTACGAGCA
TCTGAATCTTGTTCCGATTTAATCAGAAATAAAACAAAAAAAAAACAACGATATTAGAAGCATCA
AAAACCATTCAATCTTTTTGGCGTTGAATTCTAAATTTTTTATAAGTGTTGTGGCAAAAAATTGA
GAAAAAATTTTTCGAGTCAATTTTTGCAAAAATTTAGTCGAAATCATGTACTAACCATCACGATA
TTAGGCTAAAAACGCACTTCAGGGCTCCGGCTCAGTTTTGAATGACTTTTGGCGTCGAAACTCAC
CGAAATATCTATATTCATCTAATCAAATCACAGCCACATTAGATTTAAGGATATGTTTTTACGAG
CATCTGAATCTTGTTCAGATTTAATCAGAAATTAAATTACCAAAAAAAAAGAACAACAATATTAG
AAGCGTA
Done.