Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010372.1 Corchorus capsularis cultivar CVL-1 contig10393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36141

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1309--1371
33
1.9
33
100
0
126
15
38
22
23
1.93
5684--5788
29
3.4
29
70
21
88
59
15
7
18
1.59
5701--5808
32
3.3
32
74
16
114
60
12
9
17
1.58
5681--5817
65
2.1
65
91
1
222
59
13
9
18
1.60
7087--7198
31
3.6
31
86
2
145
19
22
22
35
1.96
7081--7219
61
2.3
62
77
3
147
20
22
23
33
1.97
10697--10721
13
1.9
13
100
0
50
80
0
8
12
0.92
16258--16291
2
17.5
2
93
6
61
50
0
0
50
1.00
22752--22849
33
3.0
33
95
0
178
28
35
17
18
1.93
23979--24043
21
3.2
21
61
12
55
38
13
18
29
1.89
23969--24047
39
2.0
39
100
0
158
44
12
17
25
1.84
24600--24642
21
2.0
21
95
0
77
27
11
27
32
1.92
33189--33435
42
6.0
41
75
13
202
38
19
17
25
1.92
33271--33431
85
1.8
89
81
7
204
38
21
17
22
1.93
33388--33538
48
2.9
50
83
10
189
45
15
17
21
1.86
33389--33529
53
2.8
51
88
6
198
43
17
17
21
1.87
33490--33810
41
7.9
41
81
5
346
36
18
17
27
1.93
33490--33808
122
2.6
121
81
4
374
36
18
17
27
1.93
34702--35018
125
2.6
124
83
6
383
36
17
19
27
1.94
34702--35080
123
3.1
122
81
5
442
35
18
18
26
1.95
34962--36138
347
3.5
329
83
8
1331
34
15
16
32
1.91
35551--35589
1
39.0
1
84
0
51
0
7
0
92
0.39

Tables:   1

The End!