Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010379.1 Corchorus capsularis cultivar CVL-1 contig10400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92981

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
554--588
3
11.7
3
100
0
70
34
0
0
65
0.93
630--766
31
4.5
31
82
5
145
40
11
16
32
1.84
630--766
60
2.2
62
84
5
172
40
11
16
32
1.84
885--951
31
2.2
31
86
5
93
22
17
10
49
1.77
11594--11648
17
3.2
17
82
10
67
25
20
16
38
1.92
12248--12272
12
2.1
12
100
0
50
44
40
16
0
1.47
15507--15752
78
3.1
78
84
8
323
37
11
2
48
1.52
16631--16691
9
7.2
9
82
12
58
54
0
9
36
1.34
16646--16683
3
12.7
3
88
0
58
60
0
2
36
1.11
18299--18395
45
2.2
45
98
0
185
23
13
49
13
1.77
38700--38787
43
2.0
44
93
6
151
28
17
18
36
1.93
38703--38801
43
2.2
44
85
8
130
28
18
16
37
1.92
57443--57497
28
2.0
28
100
0
110
43
18
7
30
1.77
57675--57707
2
16.5
2
100
0
66
48
0
0
51
1.00
65557--65585
14
2.1
14
100
0
58
27
6
20
44
1.77
68081--68512
215
2.0
216
94
0
767
33
28
13
24
1.93
68762--69067
122
2.5
121
84
4
355
41
13
14
31
1.84
70909--70945
18
2.0
20
84
10
51
21
16
18
43
1.88
73052--73197
79
1.8
79
86
0
211
28
10
24
35
1.90
82501--82531
2
15.5
2
100
0
62
48
0
0
51
1.00
89512--89542
16
1.9
16
93
0
53
25
3
35
35
1.72
91631--91673
22
2.0
22
81
9
52
37
9
23
30
1.86

Tables:   1

The End!