Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010388.1 Corchorus capsularis cultivar CVL-1 contig10409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 156398
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:758 original size:322 final size:323
Alignment explanation
Indices: 22--2822 Score: 3484
Period size: 322 Copynumber: 8.7 Consensus size: 323
12 AGCATCACGG
* * *** *
22 TAAAAACACGTTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGTGTCAAGACTTATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* ** ** * * *
87 AGCTATATTGTTAAAATTAACTCTCAGCCACGTTGGATTTAAGGATTTG-TTTTATGAGTATCTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
151 AATATTGTTTCGATTTAATTAGAAATTAATTCAG-AAAAAATAGGAAAAACAATATTAGAAGTGA
131 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
* *
215 TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGCGTATTTCGGCCAGAAATTG
196 TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATTG
** * * *
280 AGGGGAAAAAA-TTCGAGTCATTTTTAGCCGAAAATCGTGTACGTTAA--ATCATGG-TTTTTGA
261 AGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTAC--TAACCATCACGGTTTTTTG-
341 C
323 C
* * * *
342 TAAAAACGCGTTCTTAGGCCCCGGCTTAGTCTTGCAAGGTTTTTGGCACCAAGACTCATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* * * *
407 AGT-TATATTGATCAAATTAAATCTCAGCCACGTTGGATTTAAGGATTTG-TTTCATGAGCATCT
66 A-TCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCT
*
470 GAATATTGTTTCAATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTG
130 GAATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTG
* *
535 ATAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGTGTCAGAAATT
195 ATAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATT
* * * *
600 GAGGAAAAAAAATTTCAGGTCATTTTTAGCCGAAAATCGTGTAATAACTATCACGGTTTTTTGC
260 GAGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTTGC
* **
664 TAAAAACGTGTTCTTGGGGTTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* * *
729 ATCTACATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGAATTTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
** * * * *
794 AAT-TCAATATCTATTTAATTAGAAATTAATTCAGAAAAAAATAAGAAAAACAATATTATAAGTG
131 AATAT-TGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTG
* * *
858 ATAAAAGCCTTTCAATCTCTTTGAAGTTGAATTATATATTATTATGAGTATTAGGGCCAGAAATT
195 ATAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATT
* * *
923 GAGGAAAAAAAA-TTCGGGTCAATTTCAGCCGAAAACCGTGTACTAACCATCACGGTTTTTGGC
260 GAGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTTGC
* * *
986 TAAAAACGCGTTCTTGGCCCCCGGCTTAGTTTTGTATGGTTTTTGGCACCAAGACTCATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
1051 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
*
1116 AATATTGTTTCGATTTAATTAAAAATTAATTCAG-AAAAAATAGGAAAAACAATATTAGAAGTGA
131 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
** * *
1180 TAAAAGCCCTTCAATAATTTTGAAGTTTAATTATATATTATTATGAGTATTTGGGCCATAAATTG
196 TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATTG
* * *
1245 AGGGAAAAAAA-TTCGGCTCAATTTTAGCCGAAAATCGTGTACTAACC-TCACGATTTTTTTTGC
261 AGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACG--GTTTTTTGC
* * * * *
1308 TAAAGACGCGTTCTTGGGCCACAGCTTAGTTTTGCATGGTTTTTGGCGCCAAGGCTCATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* * * *
1373 ATCTATATTCATCTAATTAAATCTCAGACATGTTGGATTTAAGGATTTGCTTTTACGAGCATTTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * * * * *
1438 AATATTGATTCGATTTAATTACAACTTAATTTAAAAAAAAAATAAGAAAAACAATATTAGGAGTG
131 AATATTGTTTCGATTTAATTAGAAATTAA-TTCAGAAAAAAATAGGAAAAACAATATTAGAAGTG
** * *
1503 ATAAAAGCCCTTCAATAATTTTGAAGTTTAATTATATATTATTATGAGTATTTGGGTCAGAAATT
195 ATAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATT
* * *
1568 GAGCAAAAAAATTTTCGCGTCAATTTTAGCCGAAAATCGTG---T-ACCATCAC-G------G-
260 GAGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTTGC
* * * ** *
1620 TAAAAACACATTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGTGCCAAGACTTATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* ** ** * * *
1685 AGCTATATTGTTAAAATTAACTCTCAGCCACATTGGATTTAAGGATTTG-TTTTATGAGCATCTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* *
1749 TATATTGTTTCGATTTAATTAGAAACTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
131 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
* * **
1814 TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTCTGAGTATTTGTGTTAGAAATTG
196 TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATTG
* *
1879 AGG-AAAAAAATTTCGGGTCATTTTTAGCCGAAAATCGTGTAATAACCATCACGGTTTTTTGC
261 AGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTTGC
* **
1941 TAAAAACGTGTTCTTGGGGTTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* * * *
2006 ATCTACATTCATCTAATTAAATCTCAGCCATGTTCGATTTAAGGATTTGTTTTTACGAGCATTTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * *
2071 AATATTATTTCGATTTAATTATAAATTAATTCAGAAAAAAATTGAAAAAACAATATTAGAAGTGA
131 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
* * * * * ** *
2136 TAAAAGCCCTTCAATCTTTTTGAAGGTGAATTATTTATTTTTATAAGCATTTGGGCCTTAAATTT
196 TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATTG
* **
2201 AGGAAAAAAAATTTCGGGTCAATTTTAGCCAAAAATCGTGTACTAACCATCACAATTTTTTAGC
261 AGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTT-GC
* * * * * * *
2265 TGAAAACGCGTTCTTGTGCCTCGACTTAGTTTTGAAGGGTTTTTTGCGCCAAGACTCATTGAATT
1 TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* * * *
2330 ATCTATATTCATCTAATTGAATCCCAGCCACGTTGGATTTAAAGATTTGTTTTTACGAGTATCTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * *
2395 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGATAAACGATATTAGAAGCG-
131 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
* * * * * * * *
2459 TGAAAAGCCGTTCAATCTTTTGGCA-TTGAATTATATATTTTTATGAATGTTTTGGCCAAAAATT
196 T-AAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATT
* * * * * *
2523 GAGAAAAAAAAAACAAAATTCGGGTCAATTTTTGCCG-AAATCGTGTACTAATCATGATGG-TTT
260 GAG----GAAAAA-AAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTT
2586 TTGTC
320 TTG-C
* * * * * *
2591 TAAAAATC-CGTTCCATT-GCCCT-GGCTCAGTTTT-CATGATTTTTGACACAAAGACTCTTTGA
1 TAAAAA-CGCGTT-C-TTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGA
* * * * *
2652 AATATCTATATTCATCTAATTAAATCTCAGTCACGTTGGA-TAAACTGATTTGTTTTTACGAGTA
63 ATTATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAA-GGATTTGTTTTTACGAGCA
* * * * * ** *
2716 TCAGAA-ACCTGTTTCGATTTAATTAGAAGTTAATTCGGAAAAAAGTAGGAAAAATGATATTTGA
127 TCTGAATA-TTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGA
* * **
2780 AGCG-TGAAAA-CCCTTCAATATTTTTGGTGTTGAATTATATATT
191 AGTGAT-AAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATT
2823 TTTTATTGTA
Statistics
Matches: 2161, Mismatches: 276, Indels: 83
0.86 0.11 0.03
Matches are distributed among these distances:
309 33 0.02
310 93 0.04
311 37 0.02
312 97 0.04
313 9 0.00
314 1 0.00
320 154 0.07
321 328 0.15
322 615 0.28
323 234 0.11
324 307 0.14
325 179 0.08
326 24 0.01
327 28 0.01
328 22 0.01
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (323 bp):
TAAAAACGCGTTCTTGGGCCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCAGAAATTG
AGGAAAAAAAATTTCGGGTCAATTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTTGC
Found at i:1945 original size:955 final size:953
Alignment explanation
Indices: 22--2534 Score: 3348
Period size: 955 Copynumber: 2.6 Consensus size: 953
12 AGCATCACGG
* *** *
22 TAAAAACACGTTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGTGTCAAGACTTATTGAATT
1 TAAAAACGCGTTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* ** ** * * *
87 AGCTATATTGTTAAAATTAACTCTCAGCCACGTTGGATTTAAGGATTTG-TTTTATGAGTATCTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
*
151 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACAATATTAGAAGTGAT
131 AATATTGTTTCGATTTAATTAAAAATTAATTCAGAAAAAATAGGAAAAACAATATTAGAAGTGAT
* * *
216 AAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGCGTATTTCGGCCAGAAATTGA
196 AAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCATAAATTGA
* * * **
281 GGGGAAAAAATTCGAGTCATTTTTAGCCGAAAATCGTGTACGTTAA-AT--CATGGTTTTTGACT
261 GGGAAAAAAATTCG-GTCAATTTTAGCCGAAAATCGTGTAC--TAACCTCACATTTTTTTTG-CT
* * * *
343 AAAAACGCGTTCTTAGGCCCCGGCTTAGTCTTGCAAGGTTTTTGGCACCAAGACTCATTGAATTA
322 -AAAACGCGTTCTTGGGCCAC-GCTTAGTTTTGCAAGGTTTTTGGCGCCAAGACTCATTGAATTA
* * * *
408 GT-TATATTGATCAAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTCATGAGCATCTGA
385 -TCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTACGAGCATCTGA
*
472 ATATTGTTTCAATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGAT
449 ATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGAT
* *
537 AAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGTGTCAGAAATTGA
514 AAAAGCCCTTCAAT-ATTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGTCAGAAATTGA
* * *
602 GGAAAAAAAATTTCAGGTCATTTTTAGCCGAAAATCGTGTAATAACTATCACGGTTTTTTGCTAA
578 GAAAAAAAAATTTCAGGTCAATTTTAGCCGAAAATCGTG--ATAACCATCACGG-----TGCTAA
*** *** *
667 AAACGTGTTCTTGGGGTTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATTATC
636 AAACACATTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATTAGC
** * *
732 TACATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGAATTTGAAT
701 TACATTCATAAAATTAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGAATCTGAAT
* * *
797 TCAATATCTATTTAATTAGAAATTAATTCAGAAAAAAATAAGAAAAACAATATTATAAGTGATAA
766 T-AATATCGATTTAATTAGAAACTAATTCAGAAAAAAATAAGAAAAACAATATTAGAAGTGATAA
*
862 AAGCCTTTCAATCTCTTTGAAGTTGAATTATATATTATTATGAGTATTAGGGCCAGAAATTGAGG
830 AAGCCCTTCAATCTCTTTGAAGTTGAATTATATATTATTATGAGTATTAGGGCCAGAAATTGAGG
*
927 AAAAAAAATTCGGGTCAATTTCAGCCGAAAACCGTGTACTAACCATCACGGTTTTTGGC
895 AAAAAAAATTCGGGTCAATTTCAGCCGAAAACCGTGTAATAACCATCACGGTTTTTGGC
* * *
986 TAAAAACGCGTTCTTGGCCCCCGGCTTAGTTTTGTATGGTTTTTGGCACCAAGACTCATTGAATT
1 TAAAAACGCGTTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
1051 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
1116 AATATTGTTTCGATTTAATTAAAAATTAATTCAGAAAAAATAGGAAAAACAATATTAGAAGTGAT
131 AATATTGTTTCGATTTAATTAAAAATTAATTCAGAAAAAATAGGAAAAACAATATTAGAAGTGAT
** *
1181 AAAAGCCCTTCAATAATTTTGAAGTTTAATTATATATTATTATGAGTATTTGGGCCATAAATTGA
196 AAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCATAAATTGA
1246 GGGAAAAAAATTCGGCTCAATTTTAGCCGAAAATCGTGTACTAACCTCACGATTTTTTTTGCTAA
261 GGGAAAAAAATTCGG-TCAATTTTAGCCGAAAATCGTGTACTAACCTCAC-ATTTTTTTTGCTAA
* *
1311 AGACGCGTTCTTGGGCCACAGCTTAGTTTTGCATGGTTTTTGGCGCCAAGGCTCATTGAATTATC
324 A-ACGCGTTCTTGGGCCAC-GCTTAGTTTTGCAAGGTTTTTGGCGCCAAGACTCATTGAATTATC
* * *
1376 TATATTCATCTAATTAAATCTCAGACATGTTGGATTTAAGGATTTGCTTTTACGAGCATTTGAAT
387 TATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTG-TTTTACGAGCATCTGAAT
* * * * * * *
1441 ATTGATTCGATTTAATTACAACTTAATTTAAAAAAAAAATAAGAAAAACAATATTAGGAGTGATA
451 ATTGTTTCGATTTAATTAGAAATTAA-TTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGATA
*
1506 AAAGCCCTTCAATAATTTTGAAGTTTAATTATATATTATTATGAGTATTTGGGTCAGAAATTGAG
515 AAAGCCCTTCAAT-ATTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGTCAGAAATTGAG
* *
1571 CAAAAAAATTTTC-GCGTCAATTTTAGCCGAAAATCGTG-T-ACCATCAC-G-G-TAAAAACACA
579 AAAAAAAAATTTCAG-GTCAATTTTAGCCGAAAATCGTGATAACCATCACGGTGCTAAAAACACA
** * * *
1630 TTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGTGCCAAGACTTATTGAATTAGCTATATTG
643 TTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATTAGCTACATTC
* * * * * *
1695 TTAAAATTAACTCTCAGCCACATTGGATTTAAGGATTTG-TTTTATGAGCATCTGTATATT-GTT
708 ATAAAATTAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGAATCTG-A-ATTAATA
*
1758 TCGATTTAATTAGAAACTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGATAAAAGCCC
771 TCGATTTAATTAGAAACTAATTCAGAAAAAAATAAGAAAAACAATATTAGAAGTGATAAAAGCCC
* * * * **
1823 TTCAATCTTTTTGAAGTTGAATTATATATTATTCTGAGTATTTGTGTTAGAAATTGAGGAAAAAA
836 TTCAATCTCTTTGAAGTTGAATTATATATTATTATGAGTATTAGGGCCAGAAATTGAGGAAAAAA
* * * * *
1888 ATTTCGGGTCATTTTTAGCCGAAAATCGTGTAATAACCATCACGGTTTTTTGC
901 AATTCGGGTCAATTTCAGCCGAAAACCGTGTAATAACCATCACGGTTTTTGGC
* ***
1941 TAAAAACGTGTTCTTGGGGTTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
1 TAAAAACGCGTTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
* * * *
2006 ATCTACATTCATCTAATTAAATCTCAGCCATGTTCGATTTAAGGATTTGTTTTTACGAGCATTTG
66 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * *
2071 AATATTATTTCGATTTAATTATAAATTAATTCAGAAAAAAATTGAAAAAACAATATTAGAAGTGA
131 AATATTGTTTCGATTTAATTAAAAATTAATTCAG-AAAAAATAGGAAAAACAATATTAGAAGTGA
* * * * * * *
2136 TAAAAGCCCTTCAATCTTTTTGAAGGTGAATTATTTATTTTTATAAGCATTTGGGCCTTAAATTT
195 TAAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCATAAATTG
* * * *
2201 AGGAAAAAAAATTTCGGGTCAATTTTAGCCAAAAATCGTGTACTAACCATCACAATTTTTTAGCT
260 AGGGAAAAAAA-TTC-GGTCAATTTTAGCCGAAAATCGTGTACTAACC-TCACATTTTTTTTGCT
* * *
2266 GAAAACGCGTTCTTGTGCCTCGACTTAGTTTTG-AAGGGTTTTTTGCGCCAAGACTCATTGAATT
322 -AAAACGCGTTCTTGGGCCACG-CTTAGTTTTGCAA-GGTTTTTGGCGCCAAGACTCATTGAATT
* * * *
2330 ATCTATATTCATCTAATTGAATCCCAGCCACGTTGGATTTAAAGATTTGTTTTTACGAGTATCTG
384 ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTG-TTTTACGAGCATCTG
* * *
2395 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGATAAACGATATTAGAAGCG-
448 AATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGA
* * * * * * * * *
2459 TGAAAAGCCGTTCAATCTTTTGGCA-TTGAATTATATATTTTTATGAATGTTTTGGCCAAAAATT
513 T-AAAAGCCCTTCAATATTTT-GAAGTTGAATTATATATTATTATGAGTATTTGGGTCAGAAATT
2523 GAGAAAAAAAAA
576 GAGAAAAAAAAA
2535 ACAAAATTCG
Statistics
Matches: 1367, Mismatches: 160, Indels: 53
0.87 0.10 0.03
Matches are distributed among these distances:
955 378 0.28
956 236 0.17
957 180 0.13
958 9 0.01
963 4 0.00
964 109 0.08
965 178 0.13
966 99 0.07
967 46 0.03
968 128 0.09
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (953 bp):
TAAAAACGCGTTCTTGGACCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATT
ATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCTG
AATATTGTTTCGATTTAATTAAAAATTAATTCAGAAAAAATAGGAAAAACAATATTAGAAGTGAT
AAAAGCCCTTCAATCTTTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGCCATAAATTGA
GGGAAAAAAATTCGGTCAATTTTAGCCGAAAATCGTGTACTAACCTCACATTTTTTTTGCTAAAA
CGCGTTCTTGGGCCACGCTTAGTTTTGCAAGGTTTTTGGCGCCAAGACTCATTGAATTATCTATA
TTCATCTAATTAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTACGAGCATCTGAATATTGT
TTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAAGTGATAAAAGCC
CTTCAATATTTTGAAGTTGAATTATATATTATTATGAGTATTTGGGTCAGAAATTGAGAAAAAAA
AATTTCAGGTCAATTTTAGCCGAAAATCGTGATAACCATCACGGTGCTAAAAACACATTCTTGGA
CCTCGGCTTAGTTTTGCATGGTTTTTGGCACCAAGACTCATTGAATTAGCTACATTCATAAAATT
AAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGAATCTGAATTAATATCGATTTAAT
TAGAAACTAATTCAGAAAAAAATAAGAAAAACAATATTAGAAGTGATAAAAGCCCTTCAATCTCT
TTGAAGTTGAATTATATATTATTATGAGTATTAGGGCCAGAAATTGAGGAAAAAAAATTCGGGTC
AATTTCAGCCGAAAACCGTGTAATAACCATCACGGTTTTTGGC
Found at i:4661 original size:22 final size:22
Alignment explanation
Indices: 4634--4696 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
4624 ACGAGGCCAG
*
4634 ACACGAAGGTACACGCGAAGAC
1 ACACGAAGGTACACGAGAAGAC
4656 ACACGAAGGTACACGAGAAGAC
1 ACACGAAGGTACACGAGAAGAC
4678 ACACGAA-G-ACACGAGAAGA
1 ACACGAAGGTACACGAGAAGA
4697 AAGAGGCTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
20 11 0.28
21 1 0.03
22 28 0.70
ACGTcount: A:0.46, C:0.24, G:0.27, T:0.03
Consensus pattern (22 bp):
ACACGAAGGTACACGAGAAGAC
Found at i:4744 original size:59 final size:59
Alignment explanation
Indices: 4678--4801 Score: 248
Period size: 59 Copynumber: 2.1 Consensus size: 59
4668 ACGAGAAGAC
4678 ACACGAAGACACGAGAAGAAAGAGGCTCTCCGCAGTGAGGCGAGGCCAGACACGAAGGT
1 ACACGAAGACACGAGAAGAAAGAGGCTCTCCGCAGTGAGGCGAGGCCAGACACGAAGGT
4737 ACACGAAGACACGAGAAGAAAGAGGCTCTCCGCAGTGAGGCGAGGCCAGACACGAAGGT
1 ACACGAAGACACGAGAAGAAAGAGGCTCTCCGCAGTGAGGCGAGGCCAGACACGAAGGT
4796 ACACGA
1 ACACGA
4802 TAAGACACAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.36, C:0.24, G:0.33, T:0.06
Consensus pattern (59 bp):
ACACGAAGACACGAGAAGAAAGAGGCTCTCCGCAGTGAGGCGAGGCCAGACACGAAGGT
Found at i:5607 original size:45 final size:45
Alignment explanation
Indices: 5551--5680 Score: 206
Period size: 45 Copynumber: 2.9 Consensus size: 45
5541 ACAGTGAAAA
* * * *
5551 CTTGCAGGAGATCAAGGAAAGCTTAGGCTCCATGATTGCCAAATG
1 CTTGAAGGAGATCAAAGAGAGCTTTGGCTCCATGATTGCCAAATG
*
5596 CTTTAAGGAGATCAAAGAGAGCTTTGGCTCCATGATTGCCAAATG
1 CTTGAAGGAGATCAAAGAGAGCTTTGGCTCCATGATTGCCAAATG
*
5641 CTTGAAGGAGATCAAAGAGAGGTTTGGCTCCATGATTGCC
1 CTTGAAGGAGATCAAAGAGAGCTTTGGCTCCATGATTGCC
5681 GAGTGCACAA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 78 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (45 bp):
CTTGAAGGAGATCAAAGAGAGCTTTGGCTCCATGATTGCCAAATG
Found at i:12351 original size:49 final size:49
Alignment explanation
Indices: 12279--12378 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
12269 TGAAAAAACC
12279 TTCAATCTACTAACAGTCCAATTTTAATGTATTTACAAGTTAAACATCG
1 TTCAATCTACTAACAGTCCAATTTTAATGTATTTACAAGTTAAACATCG
*
12328 TTCAATCTACTAACAGTCCAATTTTGATGTATTTACAAGTTAAACATCG
1 TTCAATCTACTAACAGTCCAATTTTAATGTATTTACAAGTTAAACATCG
12377 TT
1 TT
12379 GGAAGAGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (49 bp):
TTCAATCTACTAACAGTCCAATTTTAATGTATTTACAAGTTAAACATCG
Found at i:17791 original size:1 final size:1
Alignment explanation
Indices: 17785--17816 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
17775 CATGAGTAGC
17785 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17817 GCTACACAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:18075 original size:21 final size:21
Alignment explanation
Indices: 18051--18093 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
18041 TGTACACCAT
18051 ATGTAACCTATTTATGCTCAA
1 ATGTAACCTATTTATGCTCAA
18072 ATGTAACCTATTTATGCTCAA
1 ATGTAACCTATTTATGCTCAA
18093 A
1 A
18094 CAAAAGAGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATGTAACCTATTTATGCTCAA
Found at i:27238 original size:23 final size:24
Alignment explanation
Indices: 27215--27264 Score: 64
Period size: 27 Copynumber: 2.0 Consensus size: 24
27205 AAACAATCAT
27215 CAAAACTTCTAAACCAAGAGCATCAAA
1 CAAAACTTCTAAACCAAGAGCAT---A
*
27242 CAAAACTTCTAAACTAAGAGCAT
1 CAAAACTTCTAAACCAAGAGCAT
27265 GTCGTCTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.24, G:0.08, T:0.18
Consensus pattern (24 bp):
CAAAACTTCTAAACCAAGAGCATA
Found at i:31365 original size:18 final size:18
Alignment explanation
Indices: 31342--31407 Score: 62
Period size: 18 Copynumber: 3.5 Consensus size: 18
31332 ATAATGATCT
31342 ACAAAATCCCTCTCAATC
1 ACAAAATCCCTCTCAATC
* * *
31360 ACAAAAT-CCTGTAAATGATAT
1 ACAAAATCCCTCT-CA--AT-C
31381 ACAAAATCCCTCTCAATC
1 ACAAAATCCCTCTCAATC
31399 ACAAAATCC
1 ACAAAATCC
31408 TGTAAAATTG
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
17 4 0.11
18 17 0.46
19 2 0.05
20 2 0.05
21 8 0.22
22 4 0.11
ACGTcount: A:0.44, C:0.30, G:0.03, T:0.23
Consensus pattern (18 bp):
ACAAAATCCCTCTCAATC
Found at i:31388 original size:39 final size:39
Alignment explanation
Indices: 31334--31413 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
31324 AAGACAAAAT
*
31334 AATGATCTACAAAATCCCTCTCAATCACAAAATCCTGTA
1 AATGATATACAAAATCCCTCTCAATCACAAAATCCTGTA
31373 AATGATATACAAAATCCCTCTCAATCACAAAATCCTGTA
1 AATGATATACAAAATCCCTCTCAATCACAAAATCCTGTA
31412 AA
1 AA
31414 ATTGCAAGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.26, G:0.05, T:0.25
Consensus pattern (39 bp):
AATGATATACAAAATCCCTCTCAATCACAAAATCCTGTA
Found at i:31499 original size:28 final size:28
Alignment explanation
Indices: 31462--31521 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
31452 AAAGAAGGGC
31462 AAAACAAACATGCAATTACAACCAACAA
1 AAAACAAACATGCAATTACAACCAACAA
31490 AAAACAAACATGCAATTACAACCAACAA
1 AAAACAAACATGCAATTACAACCAACAA
31518 AAAA
1 AAAA
31522 GCAAGCCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.63, C:0.23, G:0.03, T:0.10
Consensus pattern (28 bp):
AAAACAAACATGCAATTACAACCAACAA
Found at i:31892 original size:2 final size:2
Alignment explanation
Indices: 31885--31916 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
31875 ATAATTTGCC
31885 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
31917 AGGATGATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:33854 original size:3 final size:3
Alignment explanation
Indices: 33846--33873 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
33836 GCATATATAT
33846 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
33874 CCTTTGTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:33991 original size:20 final size:19
Alignment explanation
Indices: 33953--33991 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
33943 ATCAAGGATC
* *
33953 ATTTTAATTTGGAATAATA
1 ATTTTAATATGGAAAAATA
33972 ATTTTAGATATGGAAAAATA
1 ATTTTA-ATATGGAAAAATA
33992 TATTCTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (19 bp):
ATTTTAATATGGAAAAATA
Found at i:36543 original size:60 final size:60
Alignment explanation
Indices: 36475--36637 Score: 274
Period size: 60 Copynumber: 2.7 Consensus size: 60
36465 GCTAATTGCT
* * *
36475 CAAATAAGGGTCTAACGTT-TGCCAAAATGCTCAAATAAAGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTAT-CGAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
36535 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
*
36595 CAAATAAGGGCCTAACGTTATCGAAAATACTCAAATAAGGGCC
1 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCC
36638 TGGTGTCAGT
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
60 97 0.99
61 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
Found at i:36570 original size:31 final size:31
Alignment explanation
Indices: 36535--36638 Score: 108
Period size: 31 Copynumber: 3.4 Consensus size: 31
36525 TTAATTTGGC
36535 CAAATAAGGGCCTAACGTTATCGAAAATGCT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
* * * **
36566 CAAATAAGGGCCCGATC-TT-T-TAATTTGGC-
1 CAAATAAGGG-CCTAACGTTATCGAAAAT-GCT
*
36595 CAAATAAGGGCCTAACGTTATCGAAAATACT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
36626 CAAATAAGGGCCT
1 CAAATAAGGGCCT
36639 GGTGTCAGTT
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
28 4 0.07
29 15 0.27
30 5 0.09
31 28 0.50
32 4 0.07
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (31 bp):
CAAATAAGGGCCTAACGTTATCGAAAATGCT
Found at i:36606 original size:29 final size:29
Alignment explanation
Indices: 36506--36606 Score: 98
Period size: 29 Copynumber: 3.4 Consensus size: 29
36496 CCAAAATGCT
*
36506 CAAATAAAGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCCGATCTTTTAATTTGGC
* * * **
36535 CAAATAAGGG-CCTAACGTTATCGAAAAT-GC
1 CAAATAAGGGCCCGATC-TT-T-TAATTTGGC
36565 TCAAATAAGGGCCCGATCTTTTAATTTGGC
1 -CAAATAAGGGCCCGATCTTTTAATTTGGC
36595 CAAATAAGGGCC
1 CAAATAAGGGCC
36607 TAACGTTATC
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
28 4 0.07
29 26 0.47
30 6 0.11
31 15 0.27
32 4 0.07
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (29 bp):
CAAATAAGGGCCCGATCTTTTAATTTGGC
Found at i:36818 original size:60 final size:56
Alignment explanation
Indices: 36669--36825 Score: 242
Period size: 56 Copynumber: 2.7 Consensus size: 56
36659 ATGAGACAGG
* *
36669 CCCTTATTTGAGCATTTTGGCAAATGTTAGGCCCTTATTTGGCCAAATTCAAAGAT
1 CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGAT
*
36725 CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGTCAAATTAAAAGAT
1 CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGAT
*
36781 CAGACCTTTATTTGAGCATTTTGACAAACGTTAGGCCCTTATTTG
1 C---CC-TTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTG
36826 AGCAATTAGC
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
56 54 0.58
59 2 0.02
60 37 0.40
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (56 bp):
CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGAT
Found at i:39522 original size:12 final size:12
Alignment explanation
Indices: 39505--39533 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
39495 TGACAATTCC
39505 TGTTTCGTGTCG
1 TGTTTCGTGTCG
39517 TGTTTCGTGTCG
1 TGTTTCGTGTCG
39529 TGTTT
1 TGTTT
39534 ACATAGGGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.31, T:0.55
Consensus pattern (12 bp):
TGTTTCGTGTCG
Found at i:43931 original size:353 final size:354
Alignment explanation
Indices: 42882--43943 Score: 1928
Period size: 354 Copynumber: 3.0 Consensus size: 354
42872 TGAAGATTTT
*
42882 TATTGTTTTCCTGGAATTTTGGTTTATGATATTTGGGTTTCTGCTCATTTTCTTGATACTTTGTT
1 TATTGTTTTCCTGGAATTTTGGTTTATGATATTTGGGTTTCTGCTCATTTTCTTGATGCTTTGTT
*
42947 ATTGTTTTGATTTATTCTATCTCTTATAAAACATTTATTTAAATACAATGTCTCTCAACTATTGG
66 ATTGTTTTGATTTATTCTATCTCTTATAAAACCTTTATTTAAATACAATGTCTCTCAACTATTGG
*
43012 GGTGACATTTTGCATTAATTTTTTCCTTGACATGTGGCTTTGGGTTGCATTGGTTTTTGCTTAAC
131 GGTGACATTTTGCATTAATTTTTTCCTTGACATGTGGCTTTGGGTTGCATTGGTTTTTGCTTGAC
43077 ATGTGGCATGTGGGTGGGTAATTTTAAGCCAGTCTAACAATCTTGGCTATTACTTTTGATTTCCA
196 ATGTGGCATGTGGGTGGGTAATTTTAAGCCAGTCTAACAATCTTGGCTATTACTTTTGATTTCCA
*
43142 ATTCTAATCTTAACCGTTGATTTCAGATTATTTTATTATCATTCAATATGGCTTCACTTAGAATA
261 ATTCTAATCTTAACCGTTGATTTTAGATTATTTTATTATCATTCAATATGGCTTCACTTAGAATA
43207 GAGGTGACCACGGTTCGGTTTCGGTTCCG
326 GAGGTGACCACGGTTCGGTTTCGGTTCCG
*
43236 TATTGTTTTTCTGGAATTTTGGTTTATGATATTTGGGTTTCTGCTCATTTTCTTGATGCTTTGTT
1 TATTGTTTTCCTGGAATTTTGGTTTATGATATTTGGGTTTCTGCTCATTTTCTTGATGCTTTGTT
* *
43301 ATTATTTTGATTTATTCTATCTCTTATAAAACCTTTATTTAAATAAAATGTCTCTCAACTATTGG
66 ATTGTTTTGATTTATTCTATCTCTTATAAAACCTTTATTTAAATACAATGTCTCTCAACTATTGG
*
43366 GGTGACATTTTGCATTAATTTTTTCCTTGACATGTGGCTTTGGGTTGCATTGGTTTTTACTTGAC
131 GGTGACATTTTGCATTAATTTTTTCCTTGACATGTGGCTTTGGGTTGCATTGGTTTTTGCTTGAC
43431 ATGTGGCATGTGGGTGGGTAATTTTAAGCCAGTCTAACAATCTTGGCTATTACTTTTGATTTCCA
196 ATGTGGCATGTGGGTGGGTAATTTTAAGCCAGTCTAACAATCTTGGCTATTACTTTTGATTTCCA
* * *
43496 ATTCTAATCTTTACCGTTGATTTTAGATTATTTTATTATCATTCAATATGGCTTTACTTAGAGTA
261 ATTCTAATCTTAACCGTTGATTTTAGATTATTTTATTATCATTCAATATGGCTTCACTTAGAATA
*
43561 GAGGTGACCATGGTTCGGTTTCGGTTCCG
326 GAGGTGACCACGGTTCGGTTTCGGTTCCG
43590 TATTGTTTTCCTGGAATTTTGGTTTATGATATTTGGGTTTCTGCTCATTTTCTTGATGCTTTGTT
1 TATTGTTTTCCTGGAATTTTGGTTTATGATATTTGGGTTTCTGCTCATTTTCTTGATGCTTTGTT
* *
43655 ATTGTTTTGATTTATTCTATCTCTTATGAAACCTTTATTTAAATACAATGTCTCTCAGCTATTGG
66 ATTGTTTTGATTTATTCTATCTCTTATAAAACCTTTATTTAAATACAATGTCTCTCAACTATTGG
43720 GGTGACATTTTGCATTAA-TTTTTCCTTGACATGTGGCTTTGGGTTGCATTGGTTTTTGCTTGAC
131 GGTGACATTTTGCATTAATTTTTTCCTTGACATGTGGCTTTGGGTTGCATTGGTTTTTGCTTGAC
43784 ATGTGGCATGTGGGTGGGTAATTTTAAGCCAGTCTAACAATCTTGGCTATTACTTTTGATTTCCA
196 ATGTGGCATGTGGGTGGGTAATTTTAAGCCAGTCTAACAATCTTGGCTATTACTTTTGATTTCCA
* * * * * *
43849 ATTTTAATCTTCACTGTTGATTTTAGATTATTATATTATCATTCAATATGGCTCCACTTAGATTA
261 ATTCTAATCTTAACCGTTGATTTTAGATTATTTTATTATCATTCAATATGGCTTCACTTAGAATA
*
43914 GAGGTGACCACGGTTCGGTTTTGGTTCCG
326 GAGGTGACCACGGTTCGGTTTCGGTTCCG
43943 T
1 T
43944 TCTTTAAAAA
Statistics
Matches: 681, Mismatches: 27, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
353 196 0.29
354 485 0.71
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.46
Consensus pattern (354 bp):
TATTGTTTTCCTGGAATTTTGGTTTATGATATTTGGGTTTCTGCTCATTTTCTTGATGCTTTGTT
ATTGTTTTGATTTATTCTATCTCTTATAAAACCTTTATTTAAATACAATGTCTCTCAACTATTGG
GGTGACATTTTGCATTAATTTTTTCCTTGACATGTGGCTTTGGGTTGCATTGGTTTTTGCTTGAC
ATGTGGCATGTGGGTGGGTAATTTTAAGCCAGTCTAACAATCTTGGCTATTACTTTTGATTTCCA
ATTCTAATCTTAACCGTTGATTTTAGATTATTTTATTATCATTCAATATGGCTTCACTTAGAATA
GAGGTGACCACGGTTCGGTTTCGGTTCCG
Found at i:58606 original size:4 final size:4
Alignment explanation
Indices: 58599--58628 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
58589 CCAAATCCGC
58599 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
58629 AATCCTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:58707 original size:23 final size:24
Alignment explanation
Indices: 58659--58708 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
58649 GGAACAGAGA
58659 GAAAAGAAGGAAACAGACAAAAAT
1 GAAAAGAAGGAAACAGACAAAAAT
*
58683 GAAACAGAA-GAAA-AGACAAAGAT
1 GAAA-AGAAGGAAACAGACAAAAAT
58706 GAA
1 GAA
58709 CATGACTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 12 0.50
24 8 0.33
25 4 0.17
ACGTcount: A:0.66, C:0.08, G:0.22, T:0.04
Consensus pattern (24 bp):
GAAAAGAAGGAAACAGACAAAAAT
Found at i:60929 original size:18 final size:18
Alignment explanation
Indices: 60906--60942 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
60896 TGACTTTCAT
*
60906 ATATATATAGATAATAGA
1 ATATATATAGAGAATAGA
*
60924 ATATATATATAGAATAGA
1 ATATATATAGAGAATAGA
60942 A
1 A
60943 CAGCTTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (18 bp):
ATATATATAGAGAATAGA
Found at i:62241 original size:23 final size:22
Alignment explanation
Indices: 62214--62261 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 22
62204 CCATTATACT
62214 ATATCTAATTAATAGCTAAATTA
1 ATATCTAATTAATAG-TAAATTA
*
62237 ATATCTAATTAATAGTTAATTA
1 ATATCTAATTAATAGTAAATTA
62259 ATA
1 ATA
62262 ATGAATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (22 bp):
ATATCTAATTAATAGTAAATTA
Found at i:62246 original size:11 final size:11
Alignment explanation
Indices: 62214--62261 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
62204 CCATTATACT
62214 ATATCTAATTA
1 ATATCTAATTA
*
62225 ATAGCTAAATTA
1 ATATCT-AATTA
62237 ATATCTAATTA
1 ATATCTAATTA
62248 ATAGT-TAATTA
1 ATA-TCTAATTA
62259 ATA
1 ATA
62262 ATGAATAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 22 0.67
12 11 0.33
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (11 bp):
ATATCTAATTA
Found at i:65561 original size:25 final size:25
Alignment explanation
Indices: 65524--65572 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
65514 GATTGGTTTG
*
65524 TAGAGACCGAGCGAGAGTGCTCAAA
1 TAGAGACCAAGCGAGAGTGCTCAAA
*
65549 TAGAGACCAAGCGGGAGTGCTCAA
1 TAGAGACCAAGCGAGAGTGCTCAA
65573 GATTGTTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.33, T:0.12
Consensus pattern (25 bp):
TAGAGACCAAGCGAGAGTGCTCAAA
Found at i:66501 original size:20 final size:20
Alignment explanation
Indices: 66472--66606 Score: 77
Period size: 20 Copynumber: 6.8 Consensus size: 20
66462 ATAGATATTT
*
66472 TATATAATATATATTTAAAA
1 TATATTATATATATTTAAAA
66492 TATATTATATATA--T----
1 TATATTATATATATTTAAAA
* * **
66506 TATATTATATGTTTTTATTA
1 TATATTATATATATTTAAAA
* *
66526 TATA-TAAATAAAATTTAAAA
1 TATATTATAT-ATATTTAAAA
66546 TATATTATATATATTATAAATA
1 TATATTATATATATT-TAAA-A
*
66568 TATTTTATATAAATATATTCAAAA
1 TATATTATAT--ATAT-TT-AAAA
*
66592 TATATTTTATATATT
1 TATATTATATATATT
66607 ATATATGCTT
Statistics
Matches: 87, Mismatches: 14, Indels: 27
0.68 0.11 0.21
Matches are distributed among these distances:
14 11 0.13
16 1 0.01
18 1 0.01
19 4 0.05
20 29 0.33
21 9 0.10
22 14 0.16
24 14 0.16
25 4 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (20 bp):
TATATTATATATATTTAAAA
Found at i:66503 original size:9 final size:9
Alignment explanation
Indices: 66466--66612 Score: 67
Period size: 9 Copynumber: 16.2 Consensus size: 9
66456 AACCAAATAG
*
66466 ATATTTTAT
1 ATATTATAT
*
66475 ATAATATAT
1 ATATTATAT
*
66484 AT-TTAAAAT
1 ATATT-ATAT
66493 ATATTATAT
1 ATATTATAT
66502 ATATTATATT
1 ATATTATA-T
66512 ATATGT-T-T
1 ATAT-TATAT
*
66520 TTATTATAT
1 ATATTATAT
*
66529 ATA-AATA-
1 ATATTATAT
* *
66536 AAATTTAAAAT
1 ATA-TT-ATAT
66547 ATATTATAT
1 ATATTATAT
66556 ATATTATAAAT
1 ATATTAT--AT
66567 ATATT-T-T
1 ATATTATAT
*
66574 ATA-TAAAT
1 ATATTATAT
*
66582 ATATTCAAAAT
1 ATATT--ATAT
*
66593 ATATTTTAT
1 ATATTATAT
66602 ATATTATAT
1 ATATTATAT
66611 AT
1 AT
66613 GCTTTTATTA
Statistics
Matches: 104, Mismatches: 17, Indels: 34
0.67 0.11 0.22
Matches are distributed among these distances:
6 1 0.01
7 7 0.07
8 13 0.12
9 51 0.49
10 13 0.12
11 19 0.18
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.52
Consensus pattern (9 bp):
ATATTATAT
Found at i:66604 original size:46 final size:47
Alignment explanation
Indices: 66521--66609 Score: 135
Period size: 46 Copynumber: 1.9 Consensus size: 47
66511 TATATGTTTT
*
66521 TATTATATATAAATAAAATTTAAAATATATTATATATATTATAAATA
1 TATTATATATAAATAAAATTCAAAATATATTATATATATTATAAATA
* * *
66568 TATTTTATATAAAT-ATATTCAAAATATATTTTATATATTATA
1 TATTATATATAAATAAAATTCAAAATATATTATATATATTATA
66610 TATGCTTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
46 25 0.66
47 13 0.34
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (47 bp):
TATTATATATAAATAAAATTCAAAATATATTATATATATTATAAATA
Found at i:67043 original size:20 final size:20
Alignment explanation
Indices: 67018--67055 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
67008 GTGCACCTGA
67018 TAATCATCCAATTATTTGGC
1 TAATCATCCAATTATTTGGC
67038 TAATCATCCAATTATTTG
1 TAATCATCCAATTATTTG
67056 ACCATTGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (20 bp):
TAATCATCCAATTATTTGGC
Found at i:87854 original size:2 final size:2
Alignment explanation
Indices: 87847--87884 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
87837 ACATATAATC
*
87847 AT AT AT AT AT AT AT AT AT AT AT AT AG AT A- AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87885 TGTACACGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:104919 original size:12 final size:11
Alignment explanation
Indices: 104889--104926 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
104879 AGAAGAGAAG
104889 AAAGAAGA-GA
1 AAAGAAGACGA
104899 AAA-AAGACGA
1 AAAGAAGACGA
104909 AAAGAAGGACGA
1 AAAGAA-GACGA
104921 AAAGAA
1 AAAGAA
104927 ATAAATGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 4 0.16
10 8 0.32
11 2 0.08
12 11 0.44
ACGTcount: A:0.68, C:0.05, G:0.26, T:0.00
Consensus pattern (11 bp):
AAAGAAGACGA
Found at i:113425 original size:2 final size:2
Alignment explanation
Indices: 113418--113449 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
113408 AGTAATTGTG
113418 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113450 TTGTTAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113844 original size:15 final size:15
Alignment explanation
Indices: 113821--113863 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
113811 CCTTGGAACT
*
113821 TTAAAAATATCAATG
1 TTAAAAATATCAATC
* *
113836 TTGAAAATATGAA-C
1 TTAAAAATATCAATC
113850 TTAAAAATATCAAT
1 TTAAAAATATCAAT
113864 TTCGGTCTGA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
TTAAAAATATCAATC
Found at i:116652 original size:48 final size:48
Alignment explanation
Indices: 116592--116690 Score: 198
Period size: 48 Copynumber: 2.1 Consensus size: 48
116582 TTTAAAATTA
116592 CATCTCAAGTCTAACTCTAGTATAGAGCCTATGTGGGAAATTGGGATT
1 CATCTCAAGTCTAACTCTAGTATAGAGCCTATGTGGGAAATTGGGATT
116640 CATCTCAAGTCTAACTCTAGTATAGAGCCTATGTGGGAAATTGGGATT
1 CATCTCAAGTCTAACTCTAGTATAGAGCCTATGTGGGAAATTGGGATT
116688 CAT
1 CAT
116691 GGCTCACCCC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (48 bp):
CATCTCAAGTCTAACTCTAGTATAGAGCCTATGTGGGAAATTGGGATT
Found at i:121857 original size:25 final size:25
Alignment explanation
Indices: 121828--121878 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
121818 TAAACTCAAC
121828 TGACGGTGTATTGTATAATTTGCCT
1 TGACGGTGTATTGTATAATTTGCCT
121853 TGACGGTGTATTGTATAATTTGCCT
1 TGACGGTGTATTGTATAATTTGCCT
121878 T
1 T
121879 ATAGTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.24, T:0.45
Consensus pattern (25 bp):
TGACGGTGTATTGTATAATTTGCCT
Found at i:130756 original size:17 final size:18
Alignment explanation
Indices: 130734--130778 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
130724 TAAAGAAGAG
130734 CTTCTCTCTCTT-TCTTT
1 CTTCTCTCTCTTCTCTTT
130751 CTTCTCTCT-TTCTCTTT
1 CTTCTCTCTCTTCTCTTT
130768 C-TCTCCTCTCT
1 CTTCT-CTCTCT
130779 GTGCTGTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.20
17 19 0.76
18 1 0.04
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (18 bp):
CTTCTCTCTCTTCTCTTT
Found at i:139993 original size:2 final size:2
Alignment explanation
Indices: 139986--140013 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
139976 AAAGAATTTG
139986 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
140014 GGGATTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:143958 original size:20 final size:20
Alignment explanation
Indices: 143933--143972 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
143923 AACACTTTAC
143933 CTTAGTTTCAGGATGATTGT
1 CTTAGTTTCAGGATGATTGT
143953 CTTAGTTTCAGGATGATTGT
1 CTTAGTTTCAGGATGATTGT
143973 ATTGCAGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.25, T:0.45
Consensus pattern (20 bp):
CTTAGTTTCAGGATGATTGT
Found at i:153134 original size:11 final size:11
Alignment explanation
Indices: 153110--153144 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
153100 TTGACAGTGC
153110 AACAAAAACAA
1 AACAAAAACAA
* *
153121 AACGAAAACGA
1 AACAAAAACAA
153132 AACAAAAACAA
1 AACAAAAACAA
153143 AA
1 AA
153145 AATATAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.77, C:0.17, G:0.06, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:154983 original size:32 final size:32
Alignment explanation
Indices: 154937--155052 Score: 187
Period size: 32 Copynumber: 3.6 Consensus size: 32
154927 AGTCACGCGG
*
154937 AGCCTCCCCACTAGGACGGCTCTGCCACGGCT
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
* *
154969 AGCCGCCCCACTAGGACGGCTCTGCCACCGTT
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
*
155001 AGCCGTCCCACTAGGACGGCTCTGCCACGGCT
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
*
155033 AGCCGCCCCACTAGGGCGGC
1 AGCCGCCCCACTAGGACGGC
155053 AAGGCTTTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 76 1.00
ACGTcount: A:0.16, C:0.43, G:0.28, T:0.14
Consensus pattern (32 bp):
AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
Found at i:155163 original size:33 final size:33
Alignment explanation
Indices: 155121--155215 Score: 118
Period size: 33 Copynumber: 2.9 Consensus size: 33
155111 TAGTACCGGT
* *
155121 GCCGCCCCAGGGGGGCGGTCTATCCATGGTAGG
1 GCCGCCCCAGGGGGGCGGCCTAGCCATGGTAGG
* * *
155154 GCCGCCCCAGGGAGGCGGCCTGGCCATGGTAGT
1 GCCGCCCCAGGGGGGCGGCCTAGCCATGGTAGG
* * *
155187 GCCGCCCCAGGAGGGCGGCTTGGCCATGG
1 GCCGCCCCAGGGGGGCGGCCTAGCCATGG
155216 CTCAGTCGCC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.12, C:0.33, G:0.43, T:0.13
Consensus pattern (33 bp):
GCCGCCCCAGGGGGGCGGCCTAGCCATGGTAGG
Found at i:155226 original size:33 final size:31
Alignment explanation
Indices: 155122--155238 Score: 110
Period size: 33 Copynumber: 3.5 Consensus size: 31
155112 AGTACCGGTG
* ** *
155122 CCGCCCCAGGGGGGCGGTCTATCCATGGTAGGG
1 CCGCCCCA-GGGGGCGGCCTGGCCATGGTA-GT
155155 CCGCCCCAGGGAGGCGGCCTGGCCATGGTAGT
1 CCGCCCCAGGG-GGCGGCCTGGCCATGGTAGT
*
155187 GCCGCCCCAGGAGGGCGGCTTGGCCATGGCTCAGT
1 -CCGCCCCAGG-GGGCGGCCTGGCCATGG-T-AGT
155222 -CGCCCCAGGGGGACGGC
1 CCGCCCCAGGGGG-CGGC
155239 ACCGGTGGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
32 7 0.10
33 61 0.84
34 2 0.03
35 3 0.04
ACGTcount: A:0.12, C:0.34, G:0.42, T:0.12
Consensus pattern (31 bp):
CCGCCCCAGGGGGCGGCCTGGCCATGGTAGT
Found at i:155352 original size:32 final size:32
Alignment explanation
Indices: 155306--155423 Score: 166
Period size: 32 Copynumber: 3.7 Consensus size: 32
155296 AAATTAGCCG
*
155306 AGCCGCCCCACCGGGGCGGCCTGCCGTGGTGA
1 AGCCACCCCACCGGGGCGGCCTGCCGTGGTGA
155338 AGCCACCCCACCGGGGCGGCCTGCCGTGGTGA
1 AGCCACCCCACCGGGGCGGCCTGCCGTGGTGA
* *
155370 AGCCACCCCACCGGGACGGCCTGCCCTGGCT-A
1 AGCCACCCCACCGGGGCGGCCTGCCGTGG-TGA
* **
155402 AGCCGCCCCAGTGGGGCGGCCT
1 AGCCACCCCACCGGGGCGGCCT
155424 TTTCATGGGG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
32 77 0.99
33 1 0.01
ACGTcount: A:0.12, C:0.42, G:0.36, T:0.09
Consensus pattern (32 bp):
AGCCACCCCACCGGGGCGGCCTGCCGTGGTGA
Found at i:155748 original size:32 final size:32
Alignment explanation
Indices: 155707--155777 Score: 142
Period size: 32 Copynumber: 2.2 Consensus size: 32
155697 GTAATTTGAC
155707 GGTATGAAGTAGCCATTTTTTAGAAGCACATT
1 GGTATGAAGTAGCCATTTTTTAGAAGCACATT
155739 GGTATGAAGTAGCCATTTTTTAGAAGCACATT
1 GGTATGAAGTAGCCATTTTTTAGAAGCACATT
155771 GGTATGA
1 GGTATGA
155778 GTCTAACAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (32 bp):
GGTATGAAGTAGCCATTTTTTAGAAGCACATT
Done.