Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010389.1 Corchorus capsularis cultivar CVL-1 contig10410, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 39880
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:38630 original size:2 final size:2

Alignment explanation


    Indices: 38623--38664  Score: 66
    Period size: 2  Copynumber: 21.0  Consensus size: 2

      38613 TTGTTATCAA

                                     *     *                              
      38623 AT AT AT AT AT AT AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      38665 CAAACTGAAA


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45


Consensus pattern (2 bp):   
AT

Found at i:39345 original size:13 final size:13

Alignment explanation


    Indices: 39329--39356  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

      39319 GGTAATAATA

                         
      39329 AATAATTTTGGCC
          1 AATAATTTTGGCC

                         
      39342 AATAATTTTGGCC
          1 AATAATTTTGGCC

              
      39355 AA
          1 AA

      39357 AATAAATAAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Consensus pattern (13 bp):   
AATAATTTTGGCC
Done.