Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010394.1 Corchorus capsularis cultivar CVL-1 contig10415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70430

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
392--627
115
2.1
114
88
2
357
38
19
12
29
1.88
197--1447
307
4.1
307
94
0
2180
37
19
13
29
1.90
699--946
115
2.2
114
89
0
370
39
19
11
29
1.87
813--1169
192
1.8
193
86
3
513
39
19
13
28
1.89
1006--1241
115
2.1
114
93
0
400
40
19
11
29
1.86
1107--1507
192
2.1
193
88
1
590
36
18
14
29
1.91
4155--4230
29
2.6
30
85
6
111
18
26
17
38
1.92
4413--4486
29
2.5
29
84
6
96
43
12
21
22
1.86
10180--10225
17
2.9
16
87
6
67
60
0
28
10
1.30
11011--11040
1
30.0
1
100
0
60
100
0
0
0
0.00
14050--14086
16
2.3
16
90
0
56
43
8
10
37
1.69
14176--14214
2
19.5
2
100
0
78
48
0
0
51
1.00
14487--14528
15
2.9
15
82
3
50
38
7
0
54
1.28
20552--20594
20
2.2
20
100
0
86
41
23
4
30
1.74
27772--27806
17
2.2
15
90
10
52
0
11
0
88
0.51
27773--27807
13
2.6
13
90
4
52
0
14
0
85
0.59
37674--37710
17
2.2
17
90
0
56
37
5
29
27
1.79
58901--58928
14
2.0
14
100
0
56
85
0
7
7
0.73
59660--59693
4
8.8
4
87
6
52
50
2
0
47
1.16
67331--67371
2
20.5
2
100
0
82
51
0
0
48
1.00

Tables:   1

The End!