Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010401.1 Corchorus capsularis cultivar CVL-1 contig10422, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34985

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5197--5237
20
2.0
21
90
4
66
60
0
2
36
1.10
6584--6608
13
1.9
13
100
0
50
44
0
0
56
0.99
7360--7386
1
27.0
1
100
0
54
0
0
0
100
0.00
8205--8490
155
1.8
155
89
3
450
33
19
15
31
1.93
10138--10192
21
2.7
21
80
8
60
21
20
18
40
1.92
12687--12949
135
1.9
135
86
4
370
20
26
24
28
1.99
14403--14970
156
3.6
156
77
7
555
34
19
14
31
1.92
15829--15880
24
2.1
25
83
16
65
71
0
3
25
1.03
17129--17193
30
2.1
31
88
2
96
29
21
3
46
1.67
19291--19376
37
2.3
37
82
5
102
16
20
12
50
1.78
21010--21057
20
2.3
21
89
3
71
66
6
8
18
1.39
22369--22404
18
1.9
18
88
5
54
38
22
0
38
1.54
26817--26861
22
2.0
23
91
4
74
37
6
8
46
1.61
27107--27154
20
2.3
21
89
3
71
66
6
8
18
1.39
28853--28881
13
2.1
14
93
6
51
82
3
6
6
0.93
29333--30278
425
2.2
427
82
7
1117
41
13
14
31
1.84
31360--31922
156
3.6
153
79
6
600
31
15
20
32
1.93
32465--32513
22
2.2
22
78
7
55
36
32
4
26
1.75
33489--33522
17
2.1
17
94
5
61
29
38
26
5
1.80

Tables:   1

The End!