genome.fa.s10403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010403.1 Corchorus capsularis cultivar CVL-1 contig10424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82400

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3535--3649	39	2.8	40	80	11	135	40	26	12	20	1.87
5752--5828	40	1.9	40	86	5	111	22	20	23	33	1.97
6667--6886	26	7.8	26	69	27	130	41	26	13	19	1.88
6670--6898	58	3.9	58	99	0	449	41	25	13	19	1.88
7650--7749	35	2.9	35	79	4	96	28	30	14	28	1.95
8096--8371	72	3.8	73	90	2	409	21	27	19	31	1.97
9022--9052	16	1.9	16	93	0	53	32	22	29	16	1.95
9091--9127	19	1.9	19	88	0	56	40	29	13	16	1.86
10111--10225	39	2.8	40	80	11	135	40	26	12	20	1.87
13946--14020	26	2.8	27	83	2	98	17	12	29	41	1.85
14183--14236	25	2.2	25	86	0	72	31	16	9	42	1.80
15452--15512	29	2.1	29	93	0	104	36	16	31	16	1.91
17411--17450	21	1.9	21	89	0	62	45	2	12	40	1.56
17411--17458	21	2.3	21	85	0	60	45	6	10	37	1.64
17432--17536	51	2.1	51	92	3	176	39	4	17	39	1.70
17481--17571	35	2.6	35	86	6	130	38	6	17	37	1.76
18144--18311	43	3.9	43	95	0	300	38	7	19	35	1.80
18291--18326	18	2.0	18	100	0	72	33	5	22	38	1.77
18248--18369	61	2.0	61	96	0	226	36	6	21	36	1.79
18205--18491	104	2.7	104	86	7	373	38	6	18	36	1.77
18309--18425	43	2.7	43	94	0	198	38	6	17	36	1.77
18409--18448	21	1.9	21	85	10	55	45	2	15	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18415--18459	21	2.2	20	84	4	54	40	2	15	42	1.59
18454--18515	19	3.4	19	65	13	58	37	9	16	37	1.81
18454--18556	35	2.9	35	88	0	143	36	7	16	38	1.78
23567--23611	15	3.0	15	81	12	56	55	2	4	37	1.32
23625--23726	22	4.5	22	76	7	98	35	15	7	41	1.76
23625--23856	66	3.5	64	78	9	218	37	15	9	37	1.81
23715--23897	22	8.4	22	77	3	138	38	13	10	36	1.80
23666--24067	66	6.3	64	70	13	183	35	17	10	36	1.84
23625--23897	44	6.2	44	75	8	189	36	15	9	38	1.80
23963--24066	22	4.7	22	73	13	88	37	17	11	33	1.86
23941--24152	44	4.8	44	77	12	170	39	14	10	35	1.80
23939--24088	66	2.3	66	78	6	160	41	16	10	32	1.81
24049--24152	47	2.4	42	85	9	136	40	12	9	37	1.76
24304--24358	22	2.5	22	84	0	65	38	12	16	32	1.86
27651--27717	33	2.0	33	88	0	98	49	7	13	29	1.69
27974--28034	28	2.2	27	82	8	70	62	11	3	22	1.43
30170--30567	156	2.6	154	81	5	444	32	20	15	31	1.93
36123--36173	20	2.5	20	73	17	52	29	23	23	23	1.99
41572--41603	6	5.5	6	96	3	57	31	0	12	56	1.37
41890--41934	23	2.0	23	86	4	65	11	35	13	40	1.80
42984--43040	30	1.9	30	92	0	96	8	26	36	28	1.86
54070--54478	22	18.7	22	69	14	156	35	16	9	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54244--54685	44	10.4	44	69	12	208	34	15	9	40	1.80
54285--54369	23	3.8	22	78	6	82	36	12	7	43	1.70
54246--54369	45	2.8	45	79	10	121	37	13	8	40	1.76
54489--54728	22	10.9	22	74	6	112	34	15	10	40	1.80
54795--54844	22	2.3	21	80	10	55	38	22	8	32	1.83
54790--54865	22	3.5	20	75	13	53	38	21	7	32	1.82
54937--55039	22	4.6	22	76	9	75	39	15	8	35	1.78
54984--55111	22	5.8	22	78	7	100	37	15	10	35	1.83
54937--55112	44	4.0	44	81	8	162	38	17	9	34	1.82
55642--55717	38	2.0	38	84	2	100	57	13	15	13	1.65
55841--55899	31	1.9	31	93	6	102	49	3	16	30	1.63
59432--59466	19	1.9	19	88	11	56	0	14	5	80	0.89
62411--62529	36	3.4	35	77	19	133	28	17	7	46	1.75
62432--62544	32	3.4	32	77	17	131	28	18	6	46	1.73
62411--62539	68	1.9	68	90	9	210	28	17	6	46	1.74
62568--63174	36	16.9	36	88	0	847	24	22	9	42	1.83
66414--66460	23	2.1	22	88	4	67	40	8	14	36	1.77
69964--70006	10	4.0	10	77	16	50	11	48	27	11	1.74
72245--72270	10	2.6	10	100	0	52	50	19	7	23	1.73
73210--73239	6	5.0	6	100	0	60	33	0	16	50	1.46
73979--74032	27	2.0	27	82	7	65	3	16	20	59	1.52
76001--76124	64	1.9	64	98	0	239	40	16	18	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79822--80083	53	4.9	53	94	2	472	57	6	18	17	1.61
79821--80093	26	10.3	26	71	20	185	56	7	18	17	1.63
80162--80392	7	32.9	7	67	15	84	54	1	23	19	1.53
80158--80407	35	7.3	35	79	11	241	54	2	22	20	1.56
80197--80238	15	2.9	14	85	3	57	59	4	16	19	1.54
81342--81384	19	2.4	19	84	7	54	46	11	27	13	1.78

Tables:   1

The End!