Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010405.1 Corchorus capsularis cultivar CVL-1 contig10426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86416

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
595--732
46
3.0
46
96
0
258
47
3
10
38
1.56
1236--1262
4
6.8
4
100
0
54
77
0
22
0
0.76
7913--8084
76
2.3
75
89
1
263
26
20
19
34
1.96
8653--8732
26
3.2
25
65
20
58
46
25
5
23
1.72
8639--8763
50
2.5
50
94
0
214
50
25
5
18
1.68
9333--9404
31
2.4
30
93
4
126
27
38
18
15
1.90
11196--11224
14
2.1
14
100
0
58
48
0
0
51
1.00
17395--17434
20
1.9
22
85
10
57
2
40
2
55
1.27
18776--18838
32
2.0
32
96
0
117
15
33
39
11
1.83
20806--20832
14
1.9
14
100
0
54
66
3
22
7
1.33
25242--25293
22
2.3
22
83
6
68
9
40
13
36
1.77
28665--28715
22
2.3
22
83
12
61
3
25
0
70
1.04
29658--29690
17
2.0
17
94
5
59
18
0
12
69
1.18
29664--29723
31
1.9
32
82
3
77
10
5
10
75
1.19
34998--35037
21
1.9
21
94
0
71
42
37
10
10
1.72
35580--35609
15
2.0
15
100
0
60
20
33
0
46
1.51
42966--43006
15
2.7
15
82
17
57
21
4
0
73
1.02
45811--45978
31
5.5
31
70
18
156
32
20
20
26
1.97
45815--45975
60
2.7
60
97
0
295
34
19
20
26
1.96
45846--45944
29
3.4
28
69
20
76
33
17
21
28
1.95
46010--46108
30
3.3
30
67
19
89
24
17
19
39
1.92
46007--46168
60
2.7
59
91
4
263
24
17
20
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46040--46137
29
3.3
29
65
16
83
26
18
19
35
1.95
46234--46289
22
2.5
22
82
0
67
37
3
14
44
1.62
46321--46393
21
3.4
20
72
14
58
35
10
9
43
1.73
46449--46495
22
2.1
22
88
0
67
38
6
27
27
1.81
46510--46579
22
3.2
22
70
11
63
41
7
14
37
1.73
50768--50797
14
2.2
14
94
5
53
60
0
3
36
1.14
53919--53967
24
2.0
24
96
0
89
34
36
10
18
1.85
57004--57066
31
2.0
31
90
0
99
25
19
26
28
1.98
69336--69443
15
7.2
15
91
0
90
15
21
23
39
1.91
69347--69444
15
6.5
15
92
0
142
15
21
23
39
1.91
71601--71639
9
4.3
9
86
0
51
38
5
0
56
1.22
72422--72448
11
2.5
11
100
0
54
51
7
11
29
1.64
78241--78295
16
3.5
15
79
16
67
7
20
38
34
1.80
78757--78804
21
2.3
21
88
0
78
56
8
8
27
1.57
78909--79029
16
7.6
16
80
10
122
9
19
38
32
1.85
78919--79046
48
2.7
47
84
7
159
9
21
38
31
1.85
86284--86415
26
5.4
26
69
19
95
46
0
1
50
1.15
86348--86408
13
5.4
11
72
18
54
47
1
0
50
1.10

Tables:   1

The End!