Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010410.1 Corchorus capsularis cultivar CVL-1 contig10431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55897

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
763--867
31
3.4
30
73
5
95
42
15
19
22
1.88
885--977
22
4.2
21
75
17
82
37
10
13
37
1.80
1165--1208
6
7.3
6
94
0
79
65
15
2
15
1.36
3819--3919
44
2.3
44
83
8
118
44
12
8
33
1.74
3819--4009
22
8.7
22
70
12
90
44
12
10
31
1.77
3851--3934
44
1.9
44
85
0
114
42
13
11
32
1.80
4035--4109
22
3.4
22
81
3
80
38
6
18
36
1.77
4148--4199
19
2.5
21
81
9
63
30
7
23
38
1.83
7702--7737
17
2.2
17
95
5
65
16
16
13
52
1.74
8106--8146
6
6.8
6
91
0
55
51
17
9
21
1.74
8600--8625
1
26.0
1
100
0
52
0
0
0
100
0.00
9247--9290
1
44.0
1
100
0
88
0
0
0
100
0.00
14671--14888
72
3.0
72
92
0
355
26
38
18
16
1.92
16600--16665
25
2.6
25
100
0
132
59
10
15
15
1.62
20668--21062
156
2.5
154
81
5
440
30
13
21
33
1.93
33706--34125
162
2.6
158
77
12
441
30
14
20
34
1.92
36572--36800
78
3.1
76
88
6
326
36
12
0
51
1.43
42207--42271
2
33.5
2
79
17
66
47
6
0
46
1.27
42179--42265
36
2.4
36
100
0
174
45
9
0
44
1.35
44745--44791
6
7.8
6
88
11
62
85
14
0
0
0.61
44753--44792
14
3.0
14
89
10
66
80
20
0
0
0.72
45775--45836
29
2.1
29
100
0
124
33
16
11
38
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46856--46881
13
2.0
13
100
0
52
38
0
23
38
1.55
53304--53349
23
2.0
23
86
0
65
15
28
21
34
1.94
55241--55265
1
25.0
1
100
0
50
100
0
0
0
0.00
55865--55896
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!