Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010411.1 Corchorus capsularis cultivar CVL-1 contig10432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36368

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
241--365
16
7.9
16
80
8
85
6
15
40
37
1.73
223--270
21
2.2
22
88
3
71
2
16
50
31
1.57
223--270
6
7.8
6
78
21
55
2
16
50
31
1.57
259--365
47
2.2
48
88
6
155
6
14
40
38
1.73
1147--1189
16
2.7
16
88
0
68
11
13
37
37
1.82
1243--1279
10
3.6
10
92
3
56
2
18
54
24
1.57
3078--3119
21
2.0
21
86
4
59
30
16
16
35
1.92
2979--3170
96
2.0
96
93
2
332
25
9
17
47
1.78
3460--3484
5
5.0
5
100
0
50
60
0
0
40
0.97
9680--9704
11
2.3
11
100
0
50
16
0
36
48
1.46
10208--10281
30
2.4
31
84
2
96
36
16
17
29
1.92
12049--12096
25
1.9
25
87
8
71
39
6
0
54
1.26
13867--13994
41
3.1
41
89
2
204
42
14
14
27
1.85
14237--14383
39
3.7
40
93
3
251
40
17
16
25
1.89
17132--17168
14
2.5
15
95
4
67
0
5
2
91
0.48
17132--17169
19
2.1
18
90
5
58
0
5
2
92
0.47
18415--18466
11
4.8
11
75
13
54
76
17
5
0
0.97
18420--18468
17
3.1
16
75
18
57
75
16
8
0
1.03
27231--27289
27
2.2
26
84
3
73
28
1
10
59
1.40
27708--27741
15
2.3
15
90
10
52
26
5
5
61
1.42
28499--28651
73
2.1
70
79
12
173
49
0
11
38
1.44
28516--28677
73
2.3
70
81
10
195
52
1
11
35
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28635--28710
39
1.9
39
89
5
118
53
1
11
32
1.45
28560--28781
109
2.0
111
96
2
412
53
1
9
36
1.42
32684--32745
29
2.1
29
90
0
97
33
8
24
33
1.85
32790--32827
2
19.0
2
88
0
58
44
0
5
50
1.24
33104--33141
20
1.9
20
84
10
51
23
7
5
63
1.42
34373--34450
38
2.1
38
95
4
140
48
1
19
30
1.57
35985--36042
25
2.3
25
76
8
64
50
8
10
31
1.67

Tables:   1

The End!