Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010418.1 Corchorus capsularis cultivar CVL-1 contig10439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4581
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3379 original size:27 final size:27

Alignment explanation


    Indices: 3317--3380  Score: 83
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       3307 TTCACATTAA

                                       
       3317 AAAAACCAGCCTCATCCCCAACATTTG
          1 AAAAACCAGCCTCATCCCCAACATTTG

              ***       *       *      
       3344 AAGGTCCAGCCTTATCCCCACCATTTG
          1 AAAAACCAGCCTCATCCCCAACATTTG

                      
       3371 AAAAACCAGC
          1 AAAAACCAGC

       3381 AGCAGCAGCA


Statistics
Matches: 29,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.34, C:0.36, G:0.11, T:0.19


Consensus pattern (27 bp):   
AAAAACCAGCCTCATCCCCAACATTTG
Done.