Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010420.1 Corchorus capsularis cultivar CVL-1 contig10441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18232

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
900--954
25
2.3
23
77
17
58
52
12
0
34
1.40
1675--1745
30
2.3
30
92
2
115
21
16
8
53
1.69
3182--3437
100
2.5
103
84
9
326
39
10
9
40
1.71
6818--6856
21
1.9
20
84
5
51
46
12
20
20
1.83
8848--8921
36
2.1
36
82
5
87
43
4
0
52
1.20
10904--11405
22
23.0
22
71
14
211
36
15
9
38
1.81
11218--11302
23
3.8
22
83
9
100
38
15
7
38
1.74
11246--11363
60
2.0
61
87
1
175
35
16
7
39
1.78
11635--11698
21
2.8
23
79
15
62
34
15
7
42
1.76
11828--11860
17
1.9
17
93
0
57
36
27
9
27
1.87
11503--11913
22
18.9
22
67
17
126
34
16
9
38
1.82
11931--12096
22
7.5
22
76
11
135
37
18
10
34
1.84
11979--12096
44
2.6
43
86
7
164
35
16
11
35
1.86
11931--12120
44
4.3
44
76
11
122
37
17
10
35
1.83
12302--12340
20
2.0
20
84
0
51
61
2
5
30
1.31
12742--12773
10
3.1
11
91
8
50
53
0
0
46
1.00
17302--17583
41
6.7
42
77
8
252
40
26
9
23
1.85
17302--17595
85
3.5
84
84
5
351
40
26
10
23
1.86
17645--17676
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!